Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   L6L59_RS01385 Genome accession   NZ_CP091704
Coordinates   315693..316457 (-) Length   254 a.a.
NCBI ID   WP_001136198.1    Uniprot ID   -
Organism   Escherichia coli strain KGu016     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 310693..321457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L59_RS01375 (L6L59_01375) nikR 314484..314885 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  L6L59_RS01380 (L6L59_01380) nikE 314890..315696 (-) 807 WP_001521512.1 nickel import ATP-binding protein NikE -
  L6L59_RS01385 (L6L59_01385) amiE 315693..316457 (-) 765 WP_001136198.1 nickel import ATP-binding protein NikD Regulator
  L6L59_RS01390 (L6L59_01390) nikC 316457..317290 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  L6L59_RS01395 (L6L59_01395) nikB 317287..318231 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  L6L59_RS01400 (L6L59_01400) nikA 318231..319805 (-) 1575 WP_000953368.1 nickel ABC transporter substrate-binding protein -
  L6L59_RS01405 (L6L59_01405) acpT 319916..320503 (-) 588 WP_000285781.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26843.46 Da        Isoelectric Point: 6.6886

>NTDB_id=563170 L6L59_RS01385 WP_001136198.1 315693..316457(-) (amiE) [Escherichia coli strain KGu016]
MPQQIELRDIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=563170 L6L59_RS01385 WP_001136198.1 315693..316457(-) (amiE) [Escherichia coli strain KGu016]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402