Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H175_RS19295 Genome accession   NC_020376
Coordinates   3847033..3847812 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis serovar thuringiensis str. IS5056     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3842033..3852812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H175_RS19270 (H175_ch3883) uppS 3842781..3843557 (-) 777 WP_000971298.1 isoprenyl transferase -
  H175_RS19275 (H175_ch3884) frr 3843643..3844200 (-) 558 WP_000531505.1 ribosome recycling factor -
  H175_RS19280 (H175_ch3885) pyrH 3844203..3844925 (-) 723 WP_000042669.1 UMP kinase -
  H175_RS19285 (H175_ch3886) tsf 3844992..3845879 (-) 888 WP_001018577.1 translation elongation factor Ts -
  H175_RS19290 (H175_ch3887) rpsB 3845983..3846684 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  H175_RS19295 (H175_ch3888) codY 3847033..3847812 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H175_RS19300 (H175_ch3889) hslU 3847890..3849281 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  H175_RS19305 (H175_ch3890) hslV 3849304..3849846 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  H175_RS19310 (H175_ch3891) xerC 3849889..3850788 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  H175_RS19315 (H175_ch3892) trmFO 3850854..3852158 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=56297 H175_RS19295 WP_000421290.1 3847033..3847812(-) (codY) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=56297 H175_RS19295 WP_000421290.1 3847033..3847812(-) (codY) [Bacillus thuringiensis serovar thuringiensis str. IS5056]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACTTTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment