Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   L6L54_RS21725 Genome accession   NZ_CP091682
Coordinates   4434624..4435388 (+) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain KKo003     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4429624..4440388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L54_RS21705 (L6L54_21705) acpT 4430578..4431165 (+) 588 WP_000285790.1 4'-phosphopantetheinyl transferase AcpT -
  L6L54_RS21710 (L6L54_21710) nikA 4431276..4432850 (+) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  L6L54_RS21715 (L6L54_21715) nikB 4432850..4433794 (+) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  L6L54_RS21720 (L6L54_21720) nikC 4433791..4434624 (+) 834 WP_001008955.1 nickel ABC transporter permease subunit NikC -
  L6L54_RS21725 (L6L54_21725) amiE 4434624..4435388 (+) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  L6L54_RS21730 (L6L54_21730) nikE 4435385..4436191 (+) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  L6L54_RS21735 (L6L54_21735) nikR 4436197..4436598 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  L6L54_RS21740 (L6L54_21740) yhhJ 4436607..4437731 (-) 1125 WP_001314210.1 ABC transporter permease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=562902 L6L54_RS21725 WP_001136232.1 4434624..4435388(+) (amiE) [Escherichia coli strain KKo003]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=562902 L6L54_RS21725 WP_001136232.1 4434624..4435388(+) (amiE) [Escherichia coli strain KKo003]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGAATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398