Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   L3080_RS07770 Genome accession   NZ_CP091465
Coordinates   1661536..1662801 (-) Length   421 a.a.
NCBI ID   WP_004704731.1    Uniprot ID   N8R1T1
Organism   Acinetobacter baumannii strain NCCP 16007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1656536..1667801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3080_RS07740 pncA 1656716..1657360 (-) 645 WP_156190135.1 bifunctional nicotinamidase/pyrazinamidase -
  L3080_RS07745 dapA 1657690..1658583 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  L3080_RS07750 - 1658599..1659201 (+) 603 WP_001177091.1 hypothetical protein -
  L3080_RS07755 purC 1659238..1659957 (+) 720 WP_083028601.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  L3080_RS07760 - 1660150..1660353 (+) 204 WP_025469217.1 hypothetical protein -
  L3080_RS07765 - 1660681..1661520 (+) 840 WP_077165341.1 formate/nitrite transporter family protein -
  L3080_RS07770 rarA 1661536..1662801 (-) 1266 WP_004704731.1 replication-associated recombination protein A Machinery gene
  L3080_RS07775 - 1662907..1664076 (-) 1170 WP_083028641.1 PQQ-dependent sugar dehydrogenase -
  L3080_RS07780 - 1664188..1664646 (-) 459 WP_077165342.1 YcgN family cysteine cluster protein -
  L3080_RS07785 - 1664840..1664998 (+) 159 WP_002053759.1 DUF1328 domain-containing protein -
  L3080_RS07790 - 1665170..1665907 (+) 738 WP_004704724.1 dienelactone hydrolase family protein -
  L3080_RS07795 - 1666090..1666452 (+) 363 WP_039253978.1 HIT family protein -
  L3080_RS07800 mutY 1666594..1667628 (+) 1035 WP_077165343.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46889.58 Da        Isoelectric Point: 5.8354

>NTDB_id=561702 L3080_RS07770 WP_004704731.1 1661536..1662801(-) (rarA) [Acinetobacter baumannii strain NCCP 16007]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQADKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEIENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEGRIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=561702 L3080_RS07770 WP_004704731.1 1661536..1662801(-) (rarA) [Acinetobacter baumannii strain NCCP 16007]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGATTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACACGCACCACTGCGTCAAATGATTGATCAGGGGCATTTACCTTCTATTATTTTTTGGGGACCGCCAGGTGTTG
GTAAAACAACAATTGCTTTACTTTTGGCGCAAGCAATAGACCGCCCATTTGTGAGTTTGTCTGCTCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTAACACCTGTGGTTTTTATTGATGAAATTCATCGCTTTAA
TAAATCACAGCAAGATGCATTACTGGGGGCTGTAGAAAAAGGAAAAATTACCTTAATAGGCGCGACCACAGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGTTGTCAGGTCTATACTTTAAACAGTTTAGACAGCGAAGCAATTCAGACG
CTACTCAACAATGCTCTCCAAGCAGATAAATTCTTAAAAGAACGTTACATTCATATTGAAGAGTACGATGCCCTTTTGCA
GTTTGCAGCAGGCGATGCCCGTAAAGCGCTTAATTTACTAGACTTAATTGCGAGTACTTTTGAGCCAGAAATTGAAAATA
CCATTACCAATGCTGTGGTGGTAAAAGTTGCCCAGCAAAACATTGCACGTTATGACAAATCGGGTGAGCAGCATTACGAC
CTCGTTTCTGCATTTATTAAATCGATTCGTGGTAGTGATCCAGATGCAGCTCTGTACTGGATGGCTCGTATGCTTAAAGG
CGGGGAAGATCCAGTTTTTATTGCAAGACGTATGTTGATTGCAGCCTCAGAAGACATTGGAAACTCGAATCCAAATGCGC
TTTTGCTTGCAGGTGAATGTTTCCGCTCTGTTCAAGCAGTGGGTATGCCTGAAGGTCGAATTATTTTGGGCCAAACCGCG
GTTTATTTAGCAACAAGTGCAAAAAGTAATAGTACTTATTTAGCAATTAACAAAGCATTGGAACTTGCCGAGAAAACGGC
AAATTTACCAGTGCCTTTACACTTGAGAAACGCACCAACCAAGCTGATGAAACAGCAAGGCTATGGCATCAATTATCTCT
ATCCTCATGATTACCCAGAGCACTTTGTGTTGCAAGACTATTTGCCACCTGAGTTGAAGGGAACCAAACTCTACGAGTCC
GCGAGAAATAAGCGTGAGGTTGAAGGTGAACGCTTACAGCAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

AAA C-terminal domain (AAA_assoc_2)

(181-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8R1T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.5

95.012

0.385