Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LGY76_RS18775 Genome accession   NZ_CP091452
Coordinates   3870259..3871524 (-) Length   421 a.a.
NCBI ID   WP_071710283.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3865259..3876524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGY76_RS18745 pncA 3865481..3866125 (-) 645 WP_002017318.1 bifunctional nicotinamidase/pyrazinamidase -
  LGY76_RS18750 dapA 3866455..3867348 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LGY76_RS18755 - 3867364..3867966 (+) 603 WP_001177091.1 hypothetical protein -
  LGY76_RS18760 purC 3868003..3868722 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  LGY76_RS18765 - 3868915..3869118 (+) 204 WP_000418559.1 hypothetical protein -
  LGY76_RS18770 - 3869404..3870243 (+) 840 WP_000349494.1 formate/nitrite transporter family protein -
  LGY76_RS18775 rarA 3870259..3871524 (-) 1266 WP_071710283.1 replication-associated recombination protein A Machinery gene
  LGY76_RS18780 - 3871630..3872802 (-) 1173 WP_000986270.1 PQQ-dependent sugar dehydrogenase -
  LGY76_RS18785 - 3872912..3873370 (-) 459 WP_000102819.1 YcgN family cysteine cluster protein -
  LGY76_RS18790 - 3873565..3873723 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  LGY76_RS18795 - 3873895..3874632 (+) 738 WP_000100768.1 dienelactone hydrolase family protein -
  LGY76_RS18800 - 3874818..3875180 (+) 363 WP_000130110.1 HIT family protein -
  LGY76_RS18805 mutY 3875321..3876355 (+) 1035 WP_001113864.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46905.53 Da        Isoelectric Point: 5.6444

>NTDB_id=561665 LGY76_RS18775 WP_071710283.1 3870259..3871524(-) (rarA) [Acinetobacter baumannii strain AB329]
MSDTHIPLPERLRPTDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDRFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=561665 LGY76_RS18775 WP_071710283.1 3870259..3871524(-) (rarA) [Acinetobacter baumannii strain AB329]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGACAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAGATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCACGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGGCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCGAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.25

95.012

0.392