Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KFV12_RS08585 Genome accession   NZ_CP073819
Coordinates   1614362..1616782 (-) Length   806 a.a.
NCBI ID   WP_254256566.1    Uniprot ID   -
Organism   Macrococcus epidermidis strain Epi3002-OL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1609362..1621782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV12_RS08565 (KFV12_08600) - 1610415..1610729 (-) 315 WP_111715263.1 DUF1292 domain-containing protein -
  KFV12_RS08570 (KFV12_08605) ruvX 1610744..1611163 (-) 420 WP_099578561.1 Holliday junction resolvase RuvX -
  KFV12_RS08575 (KFV12_08610) - 1611156..1611425 (-) 270 WP_099578563.1 IreB family regulatory phosphoprotein -
  KFV12_RS08580 (KFV12_08615) alaS 1611487..1614111 (-) 2625 WP_254256565.1 alanine--tRNA ligase -
  KFV12_RS08585 (KFV12_08620) recD2 1614362..1616782 (-) 2421 WP_254256566.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KFV12_RS08590 (KFV12_08625) - 1616785..1617444 (-) 660 WP_254256567.1 tetratricopeptide repeat protein -
  KFV12_RS08595 (KFV12_08630) mnmA 1617523..1618641 (-) 1119 WP_254256568.1 tRNA 2-thiouridine(34) synthase MnmA -
  KFV12_RS08600 (KFV12_08635) - 1618648..1619787 (-) 1140 WP_254256569.1 cysteine desulfurase family protein -
  KFV12_RS08605 (KFV12_08640) - 1619946..1620836 (+) 891 WP_254256570.1 nuclease-related domain-containing protein -
  KFV12_RS08610 (KFV12_08645) - 1620874..1621254 (-) 381 WP_254256571.1 hypothetical protein -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 91681.34 Da        Isoelectric Point: 4.5916

>NTDB_id=560966 KFV12_RS08585 WP_254256566.1 1614362..1616782(-) (recD2) [Macrococcus epidermidis strain Epi3002-OL]
MENATLFDRSYVKGTIVRILFQNNDNFYTVLKAEVIDTNEDFDDEVTVTGFLPQIAEGDTYTFTGKIMLHAKYGKQLQAE
KFEKDLPQSKDGIIHYLSSDLFKGVGKKTARTIVEILGEDALNIILDDKSSLDQIPKLSQDKKDLIYNTINENQAIEKVM
IQLNDWGFGPQLAMKIYQFYKDDTIRVINESPYQLVMDIEGIGFNKADELARHIGIDNNHPERLKAALVYGMEQASLQNG
HTYIPDQILLETSFNLLTKNGSDVNPDALVNALTELCEEKKLLVEHEKNIYIPSLFYSETKTVQVLHRLMNHQNQLKQFE
QSEIMLAIGEIEQLFEVSYAEKQKEALMQAMHSKLMILSGGPGTGKTTVVRGIVTLYAELHGLSLDYNDYDGQDFPIVVA
APTGRASKRLYESTGLEATTIHRLIGWTRDNKPDDILENEITAKLIIIDEMSMVDTWLMFQLMKAVPNDSQIIFVGDQDQ
LPSVGPGQVFKDLIESQIIPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCQTDQIPEVIEKIVTSAV
NKGYDMRDIQVLAPIYRGNAGIRALNKVLQKILNPPEEKKREMEFGDIVFRNHDKVLQLVNRPEDSVFNGDIGEIVGIFK
AAENALNKDVVIVDYDGNEVTYTKADLIEITHAYCCSIHKAQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFC
GDVNAFNDGIKRLGNARFTSFYQFLMDYFSTDDQKDIVKSDIDTDENNENEVFKKLPFQVGEMTEENMHLVSPMINMGDI
SPYDYV

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=560966 KFV12_RS08585 WP_254256566.1 1614362..1616782(-) (recD2) [Macrococcus epidermidis strain Epi3002-OL]
TTGGAGAACGCCACTTTATTTGATCGATCTTATGTGAAAGGCACTATTGTCCGTATACTTTTTCAGAATAACGATAACTT
TTATACGGTATTAAAAGCCGAGGTAATCGATACAAATGAAGATTTTGATGATGAAGTGACGGTTACAGGTTTCCTACCTC
AAATTGCAGAAGGTGACACTTATACATTTACCGGAAAGATTATGTTACACGCTAAGTACGGGAAACAATTACAGGCAGAG
AAATTTGAGAAGGATTTACCTCAATCTAAAGACGGTATCATTCATTATCTTTCTAGTGACCTATTTAAAGGTGTCGGCAA
AAAAACAGCACGTACAATTGTTGAAATACTTGGCGAAGATGCATTGAATATTATTTTAGATGATAAAAGCAGTCTGGATC
AGATTCCGAAATTATCACAAGATAAAAAAGATTTAATTTACAATACAATCAATGAAAACCAAGCGATTGAGAAAGTAATG
ATTCAATTAAATGATTGGGGCTTTGGACCACAGCTTGCAATGAAAATCTATCAGTTTTACAAAGACGATACGATAAGAGT
AATAAATGAATCACCTTATCAATTAGTGATGGATATCGAAGGCATAGGTTTTAACAAAGCTGATGAATTAGCCCGTCATA
TCGGTATAGATAACAATCATCCTGAACGATTAAAAGCAGCATTAGTCTATGGTATGGAGCAGGCATCATTACAGAATGGT
CATACTTACATTCCGGATCAGATTTTACTCGAGACAAGCTTCAATCTATTAACAAAGAATGGTTCTGATGTTAACCCCGA
TGCATTAGTAAATGCATTAACTGAACTTTGCGAAGAGAAAAAATTACTTGTCGAACATGAAAAAAATATTTATATACCTA
GTTTATTTTATTCTGAAACAAAGACCGTTCAAGTATTACACAGATTAATGAATCATCAAAATCAACTTAAGCAATTTGAA
CAATCTGAAATAATGCTTGCTATTGGGGAGATTGAACAGTTATTTGAAGTGTCATATGCAGAAAAACAGAAGGAAGCACT
AATGCAGGCGATGCATAGTAAACTGATGATTTTATCTGGTGGTCCTGGTACTGGGAAAACAACAGTTGTAAGAGGTATTG
TGACACTTTATGCAGAACTGCATGGATTAAGTCTTGACTATAATGATTATGATGGTCAGGACTTTCCGATCGTTGTTGCA
GCACCAACAGGTCGTGCATCGAAACGACTTTATGAATCAACAGGATTGGAAGCAACAACGATTCATAGACTGATCGGTTG
GACCCGAGATAATAAGCCTGATGATATTCTGGAAAATGAAATTACTGCAAAGCTTATCATTATCGATGAGATGTCTATGG
TTGACACGTGGTTAATGTTTCAATTGATGAAAGCAGTACCAAATGACTCTCAGATTATTTTTGTAGGTGATCAGGACCAG
TTGCCATCCGTAGGTCCAGGACAAGTATTTAAAGATTTAATAGAGTCTCAAATTATTCCTCAGATTGAACTGAATGAAGT
TTATCGTCAGCAGGAAGGCTCTTCTATCGTAGAACTGGCACATCAGATTAAACGAAATGAACCATTCGATATCACAAAAC
GATACAATGATAGAAGTTTTATTCCATGCCAAACGGATCAAATTCCAGAAGTTATCGAGAAAATCGTAACATCAGCTGTT
AATAAAGGTTACGATATGCGGGATATTCAGGTGCTCGCACCAATATATCGAGGTAATGCAGGGATTCGTGCATTGAATAA
AGTTTTACAGAAAATTTTAAATCCACCAGAAGAAAAAAAGCGCGAAATGGAATTTGGTGATATTGTCTTTAGAAATCACG
ATAAAGTTTTACAGCTTGTTAACCGACCTGAAGATAGTGTATTTAACGGAGATATCGGAGAAATCGTAGGTATCTTTAAA
GCAGCAGAAAATGCACTGAATAAGGATGTTGTCATTGTAGATTATGATGGGAATGAAGTAACGTATACAAAAGCTGATTT
AATTGAAATTACCCATGCATATTGTTGCTCGATTCATAAAGCGCAAGGATCAGAATTTCCGATTGTCATTATGCCTGTTG
TCAATCAGTACTATAGAATGCTGCAGAAAAATATATTATATACAGGATTAACACGTGCGAAACAGTCACTTATCTTTTGC
GGTGATGTTAATGCCTTCAATGATGGTATAAAAAGATTAGGCAATGCCAGATTCACTTCTTTTTATCAATTTTTAATGGA
TTATTTTAGCACAGATGATCAAAAAGACATTGTAAAAAGCGACATCGATACTGATGAAAATAATGAAAATGAAGTATTTA
AAAAATTACCATTTCAGGTTGGTGAAATGACCGAAGAGAATATGCATCTAGTTTCACCGATGATTAATATGGGAGATATA
TCTCCATATGATTATGTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-653)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.124

100

0.502