Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KFV12_RS08165 Genome accession   NZ_CP073819
Coordinates   1542678..1543034 (-) Length   118 a.a.
NCBI ID   WP_255724760.1    Uniprot ID   -
Organism   Macrococcus epidermidis strain Epi3002-OL     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1537678..1548034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV12_RS08140 (KFV12_08175) gcvPA 1538363..1539706 (-) 1344 WP_111715156.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KFV12_RS08145 (KFV12_08180) gcvT 1539719..1540804 (-) 1086 WP_111715536.1 glycine cleavage system aminomethyltransferase GcvT -
  KFV12_RS08150 (KFV12_08185) - 1540942..1541448 (-) 507 WP_111715158.1 shikimate kinase -
  KFV12_RS08155 (KFV12_08190) - 1541631..1542077 (-) 447 WP_239242759.1 competence type IV pilus minor pilin ComGF -
  KFV12_RS08160 (KFV12_08195) - 1542257..1542727 (-) 471 WP_170122460.1 hypothetical protein -
  KFV12_RS08165 (KFV12_08200) comGC 1542678..1543034 (-) 357 WP_255724760.1 competence type IV pilus major pilin ComGC Machinery gene
  KFV12_RS08170 (KFV12_08205) comGB 1543046..1544083 (-) 1038 WP_170122461.1 competence type IV pilus assembly protein ComGB -
  KFV12_RS08175 (KFV12_08210) comGA 1544070..1545038 (-) 969 WP_254256546.1 competence type IV pilus ATPase ComGA Machinery gene
  KFV12_RS08180 (KFV12_08215) - 1545248..1545496 (+) 249 WP_099578437.1 DUF2626 domain-containing protein -
  KFV12_RS08185 (KFV12_08220) - 1545524..1546153 (-) 630 WP_254256547.1 MBL fold metallo-hydrolase -
  KFV12_RS08190 (KFV12_08225) - 1546246..1546485 (+) 240 WP_096076359.1 DUF2759 domain-containing protein -
  KFV12_RS08195 (KFV12_08230) - 1546522..1546833 (-) 312 WP_111715170.1 MTH1187 family thiamine-binding protein -
  KFV12_RS08200 (KFV12_08235) - 1546833..1547804 (-) 972 WP_111715172.1 ROK family glucokinase -
  KFV12_RS08205 (KFV12_08240) - 1547801..1547992 (-) 192 WP_111715173.1 YqgQ family protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13249.42 Da        Isoelectric Point: 9.1081

>NTDB_id=560963 KFV12_RS08165 WP_255724760.1 1542678..1543034(-) (comGC) [Macrococcus epidermidis strain Epi3002-OL]
MYKFIKTHSNHFVRSFKNQFSKNDGFTLIEMLLVLLVISVLIIVIIPNIAKQSDNVQNTGCTAQVKMVQGQIEAYKLQNG
KTPTSINELVPEFLKENQVKCKNGDPINIENGEAVAQK

Nucleotide


Download         Length: 357 bp        

>NTDB_id=560963 KFV12_RS08165 WP_255724760.1 1542678..1543034(-) (comGC) [Macrococcus epidermidis strain Epi3002-OL]
ATGTATAAATTTATTAAAACACATAGTAATCATTTTGTTCGATCTTTTAAAAATCAATTCAGTAAAAATGATGGATTTAC
TTTAATAGAAATGCTGCTTGTTTTGCTTGTTATTTCGGTATTAATCATTGTGATTATTCCAAATATCGCAAAACAATCTG
ATAATGTTCAGAATACAGGTTGTACAGCACAGGTGAAGATGGTACAAGGACAAATAGAAGCATATAAACTTCAGAATGGA
AAGACGCCAACGTCGATTAATGAACTTGTACCGGAATTTTTAAAGGAAAATCAGGTGAAATGTAAAAATGGTGATCCAAT
CAATATTGAAAATGGAGAAGCGGTGGCACAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(21-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

53.846

99.153

0.534
  comGC Staphylococcus aureus N315

53.846

99.153

0.534