Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KFV11_RS07055 Genome accession   NZ_CP073809
Coordinates   1350480..1352861 (-) Length   793 a.a.
NCBI ID   WP_254249572.1    Uniprot ID   A0A9Q9BK13
Organism   Macrococcus equipercicus strain Epi0143-OL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1345480..1357861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV11_RS07035 (KFV11_07060) - 1346529..1346861 (-) 333 WP_149458501.1 DUF1292 domain-containing protein -
  KFV11_RS07040 (KFV11_07065) ruvX 1346873..1347295 (-) 423 WP_149458500.1 Holliday junction resolvase RuvX -
  KFV11_RS07045 (KFV11_07070) - 1347288..1347557 (-) 270 WP_149458499.1 IreB family regulatory phosphoprotein -
  KFV11_RS07050 (KFV11_07075) alaS 1347619..1350246 (-) 2628 WP_254249571.1 alanine--tRNA ligase -
  KFV11_RS07055 (KFV11_07080) recD2 1350480..1352861 (-) 2382 WP_254249572.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KFV11_RS07060 (KFV11_07085) - 1352866..1353525 (-) 660 WP_149458496.1 tetratricopeptide repeat protein -
  KFV11_RS07065 (KFV11_07090) mnmA 1353583..1354695 (-) 1113 WP_254249573.1 tRNA 2-thiouridine(34) synthase MnmA -
  KFV11_RS07070 (KFV11_07095) - 1354688..1355842 (-) 1155 WP_254249574.1 cysteine desulfurase family protein -
  KFV11_RS07075 (KFV11_07100) - 1355977..1356897 (+) 921 WP_254249575.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 90067.96 Da        Isoelectric Point: 4.7071

>NTDB_id=560934 KFV11_RS07055 WP_254249572.1 1350480..1352861(-) (recD2) [Macrococcus equipercicus strain Epi0143-OL]
MENMSLFDQPFVKGTITRILFQNADNFYTVLKAEVIDSNEDFEEEVTVTGYFPQIAEGDTYTFTGRTVTHPKYGKQLTAD
KFEKEMPQTKDGVIHYLSSDLFKGIGKKIARQIVDILGEDALNIIMDDRSSLDRVPKLSPEKKDMIYQTISENQAIEKTM
IKLNDWGFGPQLAMKIYQFYKEDTIRVIKESPYRLVMDIQGIGFNKADELAHRLGIAGSHPERLKAALVYSMEQACLQNG
HTYIPEDMLLETSYHLLTKTGETVDTGLLVHKLLELTEEKVLVKEQDRIYLPSLFYSEMKTVQTLHRLMNHQDNIKQFEQ
SEVLLMIGELEDLFEVSYARKQREALQIAMNSKMMILSGGPGTGKTTVIRGIVNLYAELHGLSLDYKDYEQSDFPIAVAA
PTGRASKRLSESTGLEATTIHRLIGWTRESKPDDILENEITAKLVIIDEMSMVDTWLMFQLMRAVPNDCQLIFVGDQDQL
PSVGPGQVFRDMIESKIMPQVELEEVYRQQEGSSIIELAHQIKRNQPFDIAARYNDRSFIPCSTEQIPAVINQVVTRAVD
KGYDKRDIQVLAPIYKGKAGIKFLNQELQDILNPKADDKRELPFGDVVYRKNDKVLQLVNRPEDNVFNGDIGEVVGIFMA
AENALNKDVVIVDYDGNEVTYTKQDLTELTHAYCCSIHKSQGSEFPIVIMPVVRAYYRMLQKNILYTGLTRAKQSLIICG
ERQAFDEGIARTGLERMTSFSTVLQEYFKPDEALDTVPAAIPVGELTEDNMHLIAPMINMDGISPYDYQTVDE

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=560934 KFV11_RS07055 WP_254249572.1 1350480..1352861(-) (recD2) [Macrococcus equipercicus strain Epi0143-OL]
GTGGAGAATATGTCTTTATTTGATCAGCCGTTCGTCAAAGGGACGATCACCCGGATTCTGTTTCAGAACGCCGACAACTT
TTATACTGTCTTGAAAGCGGAAGTGATTGATTCAAATGAAGACTTTGAAGAAGAAGTCACAGTGACGGGTTATTTCCCGC
AGATCGCTGAAGGTGATACATATACATTCACCGGGCGGACAGTGACGCATCCTAAATACGGAAAACAGCTGACTGCGGAC
AAGTTTGAAAAAGAGATGCCGCAGACAAAAGACGGTGTCATCCATTATTTATCAAGTGATCTGTTCAAAGGAATCGGCAA
GAAAATCGCGCGCCAGATTGTCGACATTCTCGGCGAGGATGCACTGAACATCATCATGGATGACCGGTCATCACTGGACC
GGGTGCCGAAGCTGTCACCTGAGAAGAAAGATATGATCTATCAGACTATCAGTGAAAATCAGGCGATTGAAAAGACTATG
ATCAAGCTGAATGACTGGGGCTTCGGTCCGCAGCTCGCCATGAAGATCTATCAGTTTTACAAGGAAGACACTATCCGGGT
CATCAAAGAATCGCCTTACAGGCTGGTCATGGATATTCAGGGGATCGGTTTCAACAAAGCAGATGAACTGGCCCATCGTC
TCGGTATTGCAGGCAGTCATCCCGAACGACTGAAGGCTGCACTCGTCTATTCGATGGAGCAGGCATGTCTGCAGAACGGA
CACACTTATATCCCTGAAGATATGCTGCTTGAGACATCTTACCACCTGCTGACGAAGACAGGGGAAACAGTGGACACCGG
GCTGCTCGTCCATAAACTGCTGGAACTGACGGAAGAGAAAGTGCTTGTTAAAGAGCAGGACCGCATTTATCTGCCGAGTC
TGTTCTATTCTGAGATGAAGACCGTGCAGACGCTCCACCGGCTGATGAACCATCAGGATAACATCAAGCAGTTTGAACAG
TCGGAAGTGCTGCTGATGATCGGGGAGCTTGAAGATCTCTTTGAAGTGAGCTATGCCAGGAAGCAGCGCGAGGCCCTGCA
GATAGCCATGAACAGCAAGATGATGATTCTATCAGGCGGACCCGGCACAGGTAAGACCACAGTGATCCGCGGAATCGTCA
ACTTGTATGCGGAGCTCCACGGCCTCAGCCTGGACTATAAGGACTATGAGCAGTCTGATTTTCCGATTGCAGTTGCGGCG
CCTACCGGCCGGGCTTCCAAGCGGCTGTCTGAATCAACCGGGCTAGAAGCGACGACCATTCACCGGCTGATCGGCTGGAC
GCGTGAAAGCAAGCCGGACGACATTCTTGAAAATGAGATCACTGCTAAGCTCGTCATTATCGATGAGATGTCGATGGTGG
ATACATGGCTGATGTTCCAGTTGATGCGTGCCGTGCCGAATGACTGTCAGCTGATCTTTGTCGGTGACCAGGACCAGCTG
CCGTCAGTCGGACCGGGCCAGGTATTCAGAGATATGATCGAATCAAAGATCATGCCGCAGGTCGAGCTGGAAGAAGTGTA
CCGGCAGCAGGAAGGGTCCTCTATCATTGAGCTTGCCCATCAGATTAAGCGTAATCAGCCGTTCGATATCGCTGCGCGCT
ATAATGACCGGTCATTTATACCTTGTTCGACCGAGCAGATCCCGGCGGTCATCAATCAAGTGGTCACCCGCGCTGTGGAT
AAAGGCTATGATAAGCGGGATATCCAGGTGCTGGCACCGATATACAAAGGGAAAGCCGGCATCAAGTTTCTGAATCAGGA
GCTGCAGGACATACTGAATCCGAAGGCTGATGATAAGCGGGAACTGCCGTTCGGCGATGTCGTCTACCGCAAAAATGACA
AAGTGCTGCAGCTGGTCAACCGGCCCGAGGACAACGTGTTCAACGGTGATATCGGTGAAGTGGTCGGTATTTTCATGGCG
GCGGAGAACGCGCTGAATAAAGACGTCGTCATCGTCGATTATGACGGGAACGAAGTCACTTATACGAAGCAGGACTTGAC
TGAACTGACGCACGCCTACTGCTGTTCCATACATAAGTCCCAAGGGTCTGAGTTTCCGATCGTCATCATGCCAGTCGTGC
GTGCCTATTACCGCATGCTGCAGAAAAACATACTATACACCGGGCTGACCCGTGCGAAGCAGTCCCTCATTATCTGCGGG
GAGCGGCAGGCATTCGATGAAGGAATCGCGAGAACCGGACTTGAACGAATGACTTCCTTCAGCACGGTGCTGCAGGAATA
TTTCAAGCCGGATGAAGCGCTGGACACGGTGCCGGCTGCGATTCCGGTCGGAGAACTGACAGAGGACAATATGCATTTAA
TTGCACCGATGATCAATATGGACGGGATTTCACCGTATGATTATCAAACAGTTGACGAATAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(338-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.943

100

0.511