Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KFV10_RS07255 Genome accession   NZ_CP073808
Coordinates   1403431..1405824 (-) Length   797 a.a.
NCBI ID   WP_254253423.1    Uniprot ID   -
Organism   Macrococcoides canis strain IMD0709     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1398431..1410824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV10_RS07235 (KFV10_07225) - 1399492..1399803 (-) 312 WP_099482913.1 DUF1292 domain-containing protein -
  KFV10_RS07240 (KFV10_07230) ruvX 1399819..1400238 (-) 420 WP_086042803.1 Holliday junction resolvase RuvX -
  KFV10_RS07245 (KFV10_07235) - 1400231..1400476 (-) 246 WP_226997688.1 IreB family regulatory phosphoprotein -
  KFV10_RS07250 (KFV10_07240) alaS 1400556..1403180 (-) 2625 WP_254253422.1 alanine--tRNA ligase -
  KFV10_RS12000 - 1403262..1403396 (+) 135 WP_261785719.1 hypothetical protein -
  KFV10_RS07255 (KFV10_07245) recD2 1403431..1405824 (-) 2394 WP_254253423.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KFV10_RS07260 (KFV10_07250) - 1405827..1406486 (-) 660 WP_236365656.1 tetratricopeptide repeat protein -
  KFV10_RS07265 (KFV10_07255) mnmA 1406587..1407702 (-) 1116 WP_254253424.1 tRNA 2-thiouridine(34) synthase MnmA -
  KFV10_RS07270 (KFV10_07260) - 1407714..1408841 (-) 1128 WP_254253425.1 cysteine desulfurase family protein -
  KFV10_RS07275 (KFV10_07265) - 1409014..1410009 (+) 996 WP_086042809.1 LLM class flavin-dependent oxidoreductase -
  KFV10_RS07280 (KFV10_07270) cymR 1410127..1410549 (-) 423 WP_086042810.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90169.41 Da        Isoelectric Point: 4.5261

>NTDB_id=560902 KFV10_RS07255 WP_254253423.1 1403431..1405824(-) (recD2) [Macrococcoides canis strain IMD0709]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDRVPKLSDEKKDLIFNTIHDNQAIEKIM
IRLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSHVDPDRLVIALTELTEENKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKDQVKQFEQ
SEVLLAIGELESLFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSSQIPEVIEKIVRSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DVQAFNEGIKRIGNARFTSFYQFLIDYFKTDEADDTKLDNAGDNVLPFNVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=560902 KFV10_RS07255 WP_254253423.1 1403431..1405824(-) (recD2) [Macrococcoides canis strain IMD0709]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGAACAATAACGAGAATATTATTCTATAACAATGATAATTT
CTATACTGTGCTGAAGGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGGTACCTTCCGC
AAATTGCAGAAGGGGATACATACACGTTCACAGGTAAGATTGTAACGCATCCGAAGTACGGAAAGCAGTTACAGGCAGAT
AAGTTTGAGAAGGATATGCCGCAGTCACGTGACGGTATTATTCATTATTTATCGAGTGATCTGTTTAAAGGGGTCGGTAA
GAAAACAGCGAGAACAATCGTTGAAGTCCTGGGTGAAGATGCGCTAAATATTATTCTCGATGATAAGAGTAGTCTTGACA
GAGTCCCGAAGTTATCAGACGAGAAAAAAGATCTAATTTTTAATACGATACACGACAATCAGGCAATCGAGAAGATTATG
ATTCGTCTGAATGAATTTGGATTCGGTCCACAGCTTGCAATGAAGATCTATCAGTTCTATAAGGATGATACGCTGAAGGT
GATTAATGAATCCCCATATCAACTCGTGATGGATATTGAAGGTATCGGATTTAATAAGGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCCGAACGTCTGAAAGCAGCGCTCGTGTTTACGATAGAGCAAGCCTCTAATCAGAATGGT
CATACATATATTCCGGACCAGGTGCTACTTGAAACGAGCTTCAATCTACTGACGAAAAATGGCAGTCATGTCGATCCAGA
CCGTCTCGTTATCGCACTCACTGAACTCACAGAGGAAAATAAGCTCGTTGAACATGAGAAGAACATCTATATCCCGAGTC
TATTCTATTCTGAAACGAAAGCTGTACAAATATTGCATCGATTAATGAATCATAAGGATCAGGTGAAACAGTTCGAACAG
TCTGAAGTATTGCTGGCAATCGGGGAACTGGAGTCACTGTTCGAAGTGAGTTATGCAGAACGACAGAAAGATGCGCTTGT
AACGGCGATGAACAGTAAACTGATGATCTTAACGGGGGGACCAGGTACAGGAAAGACGACGGTTGTGCGCGGTATTGTGA
ATTTGTATGCTGAACTGCATGGGTTAAGTCTAGATTATGATGACTATGATGGACAGGACTATCCGATTGTTGTCGCAGCA
CCCACTGGTCGTGCATCGAAACGTCTTCAGGAGTCAACAGGCCTTGAAGCGACGACAATACACAGGTTAATTGGCTGGAC
GAGAGAGAATAAACCCGATGATGTACTGGAAACGGAAATTACAGCGAAGCTTGTCATTATCGATGAAATGTCGATGGTTG
ATACGTGGCTCATGTTTCAGTTGATGAAAGCTGTGCCGAATGATGCACAGATTATCTTTGTCGGTGACCAGGACCAGCTG
CCATCCGTTGGACCAGGGCAAGTGTTCAAAGACATGATAGATGCACAAATTATGCCGCAGATTGAGCTGAATGAAGTGTA
CAGGCAGCAGGAAGGTTCATCAATCGTTGAACTTGCGCACCAAATTAAGCGTAATGAACCATTTGATATTACGAAACGTT
ATAATGACAGAAGCTTTATACCGTGCTCAAGCAGTCAAATACCAGAAGTGATCGAGAAGATCGTGCGCAGTGCTGTGAAT
AAAGGGTATGACATGCGTGATATACAAGTACTCGCACCGATATATAGAGGGCCAGCGGGTATACGTGCGCTGAACAAAGT
ACTGCAGGAAATATTGAATCCAAGTGATGAAAACAAGCGTGAACTACAGTTTGGTGATGTTTATTTCAGAACAGGGGACA
AAGTGCTGCAGCTTGTCAATCGACCGGAAGACAATGTGTTTAACGGCGATATTGGTGAAGTGACGGGTATCTTCATGGCG
GCAGAGAACGCACTGAATAAAGATGTTGTCATTGTGGATTATGATGGGAGTGAAGTGACGTATACGAAAGCGGATTTAAT
GGAAGTTACACATGCCTACTGCTGCTCCATTCATAAATCACAAGGTTCAGAATTTCCGATTGTTATTATGCCGGTTGTCA
ATCAATACTTCAGAATGCTGCAGAAGAATATACTCTATACCGGATTAACACGCGCGAAACAGTCACTTATTTTCTGTGGA
GATGTACAGGCGTTTAATGAAGGAATAAAGCGAATCGGTAACGCAAGATTTACAAGCTTCTATCAGTTTCTTATCGATTA
TTTTAAGACAGATGAAGCAGATGATACAAAGCTTGATAATGCAGGTGACAACGTATTACCTTTCAACGTTGGTGAGATGA
CTGAAGACAATATGCATCTCGTTGATCCGATGATCAACATGGAAGGTATAACACCCTATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(338-543)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.677

100

0.522