Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KFV06_RS06675 Genome accession   NZ_CP073801
Coordinates   1308990..1311380 (-) Length   796 a.a.
NCBI ID   WP_101035474.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19Msa198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1303990..1316380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV06_RS06655 (KFV06_06655) - 1305055..1305366 (-) 312 WP_041636040.1 DUF1292 domain-containing protein -
  KFV06_RS06660 (KFV06_06660) ruvX 1305382..1305801 (-) 420 WP_012657161.1 Holliday junction resolvase RuvX -
  KFV06_RS06665 (KFV06_06665) - 1305794..1306039 (-) 246 WP_012657162.1 IreB family regulatory phosphoprotein -
  KFV06_RS06670 (KFV06_06670) alaS 1306119..1308743 (-) 2625 WP_254256302.1 alanine--tRNA ligase -
  KFV06_RS06675 (KFV06_06675) recD2 1308990..1311380 (-) 2391 WP_101035474.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KFV06_RS06680 (KFV06_06680) - 1311383..1312042 (-) 660 WP_101037055.1 tetratricopeptide repeat protein -
  KFV06_RS06685 (KFV06_06685) mnmA 1312103..1313218 (-) 1116 WP_012657166.1 tRNA 2-thiouridine(34) synthase MnmA -
  KFV06_RS06690 (KFV06_06690) - 1313230..1314357 (-) 1128 WP_101041613.1 cysteine desulfurase family protein -
  KFV06_RS06695 (KFV06_06695) - 1314529..1315524 (+) 996 WP_012657168.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90346.67 Da        Isoelectric Point: 4.5492

>NTDB_id=560806 KFV06_RS06675 WP_101035474.1 1308990..1311380(-) (recD2) [Macrococcoides caseolyticum strain 19Msa198]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIITHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDQVPKLSDEKKELIYSTIHDNQAIEKIM
IQLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVNPDRLVIALTELTEEHKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKNQVKEFEQ
SEVLMAIGDLETLFEVSYAERQKDALITAMNAKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTKENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPDDAQIIFVGDQDQL
PSVGPGQVFKDMIDAHIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDIKKRYNDRSFIPCTSNQIPEVIEKIVRSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDIYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEITHAYCCSIHKSQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFCG
DVHAFNEGIKRIGNTRFTSFYQFLIDYFNEDEINDKKQDDQGNILPFNVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=560806 KFV06_RS06675 WP_101035474.1 1308990..1311380(-) (recD2) [Macrococcoides caseolyticum strain 19Msa198]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGGACAATAACGAGAATATTATTCTATAACAATGATAATTT
CTATACTGTGCTGAAGGCTGAAGTGATTGAATCAAATGAAGATTTTGATGATGATGCTACGATTACAGGTTATCTCCCAC
AAATTGCAGAAGGCGATACATATACTTTTACCGGTAAGATTATAACGCATCCGAAGTATGGAAAGCAGCTCCAGGCGGAT
AAATTTGAGAAGGATATGCCACAGTCGCGTGACGGTATTATTCATTATTTATCAAGTGATTTGTTTAAAGGAGTCGGTAA
GAAAACAGCGAGAACGATTGTAGAAGTGCTTGGTGAAGATGCACTGAACATTATTCTTGATGATAAAAGTAGTCTTGACC
AGGTACCGAAGTTATCAGATGAGAAGAAAGAATTAATCTATAGTACGATTCATGATAATCAGGCGATTGAGAAAATCATG
ATTCAGCTGAATGAATTTGGGTTCGGGCCGCAGCTTGCGATGAAGATTTATCAGTTCTATAAGGACGATACGCTAAAGGT
GATTAATGAATCTCCGTATCAACTCGTGATGGATATTGAAGGGATCGGATTTAATAAAGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCAGAGCGTCTGAAAGCAGCGCTCGTGTTTACGATAGAACAAGCCTCTAACCAGAATGGA
CACACATATATTCCGGACCAGGTATTACTTGAAACAAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCAATCCTGA
TCGCCTCGTTATCGCACTCACTGAACTGACAGAGGAACATAAGCTCGTTGAACATGAGAAGAACATCTATATTCCAAGTC
TATTCTATTCTGAAACAAAAGCTGTACAAATATTACATCGATTAATGAACCATAAGAATCAGGTGAAAGAGTTCGAACAG
TCAGAAGTATTGATGGCAATTGGGGATCTGGAAACCTTGTTTGAAGTCAGCTATGCAGAACGTCAGAAAGATGCACTTAT
TACGGCGATGAACGCTAAGCTGATGATTCTAACGGGGGGTCCTGGTACAGGAAAGACGACAGTCGTACGTGGTATTGTTA
ATTTATATGCCGAGCTGCATGGCTTAAGTCTAGATTATGATGACTATGACGGACAGGACTATCCGATTGTCGTCGCAGCA
CCGACTGGTCGTGCGTCAAAGCGTCTTCAGGAATCGACGGGACTTGAAGCGACGACGATACACAGGTTAATTGGATGGAC
AAAAGAAAATAAACCGGACGACGTGCTGGAAACCGAAATTACAGCGAAACTGGTCATTATTGATGAAATGTCAATGGTTG
ATACGTGGCTTATGTTTCAATTGATGAAGGCTGTACCAGACGATGCCCAGATTATATTTGTCGGTGACCAGGATCAGCTC
CCTTCGGTCGGTCCAGGTCAAGTATTTAAGGATATGATTGATGCACACATTATGCCTCAGATTGAACTGAACGAGGTGTA
TAGACAGCAGGAAGGTTCCTCGATTGTCGAACTAGCACATCAGATTAAGCGCAATGAACCTTTTGACATTAAGAAAAGAT
ATAATGACAGAAGTTTTATACCGTGTACAAGCAACCAAATTCCGGAAGTGATTGAGAAAATTGTACGCAGCGCTGTGAAT
AAAGGGTACGATATGCGTGACATACAAGTACTCGCACCGATATATAGGGGGCCAGCAGGTATACGTGCATTGAATAAAGT
ATTGCAGGAAATACTGAATCCAAGCGATGAAAACAAACGTGAACTGCAATTTGGTGATATTTATTTCAGAACGGGTGATA
AAGTTTTGCAGCTTGTCAATCGACCTGAAGATAATGTATTTAATGGTGATATTGGAGAAGTCACTGGTATATTTATGGCA
GCTGAGAATGCATTAAATAAAGATGTTGTGATTGTTGACTATGATGGCAGTGAAGTAACGTATACGAAAGCAGATTTAAT
GGAAATTACACATGCATATTGCTGTTCTATTCATAAGTCCCAAGGTTCGGAATTTCCGATAGTAATCATGCCTGTTGTCA
ATCAGTACTACAGAATGTTGCAGAAGAATATTCTGTATACGGGATTAACACGTGCAAAACAATCCCTAATATTCTGTGGA
GATGTTCACGCTTTTAATGAAGGAATTAAGCGTATCGGTAATACAAGGTTTACAAGCTTCTATCAGTTTCTAATCGATTA
TTTTAACGAAGACGAAATAAATGACAAAAAGCAAGATGACCAAGGTAATATACTACCTTTCAACGTGGGGGAGATGACTG
AAGACAATATGCATCTTGTTGATCCGATGATCAATATGGAAGGTATAACACCATATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

AAA domain (AAA_30)

(338-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.687

100

0.51