Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   L2Z09_RS17800 Genome accession   NZ_CP091365
Coordinates   3712819..3714084 (-) Length   421 a.a.
NCBI ID   WP_001285407.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB172-VUB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3707819..3719084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z09_RS17770 (L2Z09_17765) pncA 3708046..3708690 (-) 645 WP_000783437.1 bifunctional nicotinamidase/pyrazinamidase -
  L2Z09_RS17775 (L2Z09_17770) dapA 3709020..3709913 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  L2Z09_RS17780 (L2Z09_17775) - 3709929..3710531 (+) 603 WP_001177091.1 hypothetical protein -
  L2Z09_RS17785 (L2Z09_17780) purC 3710569..3711288 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  L2Z09_RS17790 (L2Z09_17785) - 3711477..3711680 (+) 204 WP_000418560.1 hypothetical protein -
  L2Z09_RS17795 (L2Z09_17790) - 3711965..3712804 (+) 840 WP_000349492.1 formate/nitrite transporter family protein -
  L2Z09_RS17800 (L2Z09_17795) rarA 3712819..3714084 (-) 1266 WP_001285407.1 replication-associated recombination protein A Machinery gene
  L2Z09_RS17805 (L2Z09_17800) - 3714190..3715359 (-) 1170 WP_079255503.1 PQQ-dependent sugar dehydrogenase -
  L2Z09_RS17810 (L2Z09_17805) - 3715472..3715930 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  L2Z09_RS17815 (L2Z09_17810) - 3716125..3716283 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  L2Z09_RS17820 (L2Z09_17815) - 3716455..3717192 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  L2Z09_RS17825 (L2Z09_17820) - 3717377..3717739 (+) 363 WP_000130110.1 HIT family protein -
  L2Z09_RS17830 (L2Z09_17825) mutY 3717881..3718915 (+) 1035 WP_001113873.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46946.63 Da        Isoelectric Point: 5.8354

>NTDB_id=560470 L2Z09_RS17800 WP_001285407.1 3712819..3714084(-) (rarA) [Acinetobacter baumannii strain AB172-VUB]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAIVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=560470 L2Z09_RS17800 WP_001285407.1 3712819..3714084(-) (rarA) [Acinetobacter baumannii strain AB172-VUB]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACATTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAATTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTGGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTATCCAGAGCACTTTGTACTGCAAGATTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

AAA C-terminal domain (AAA_assoc_2)

(181-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387