Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C663_RS15365 Genome accession   NC_020244
Coordinates   3064686..3065330 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3059686..3070330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS15330 (C663_3022) mrpB 3060879..3061310 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  C663_RS15335 (C663_3023) mrpC 3061310..3061651 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C663_RS15340 (C663_3024) mrpD 3061644..3063125 (+) 1482 WP_015384516.1 Na+/H+ antiporter subunit D -
  C663_RS15345 (C663_3025) mrpE 3063131..3063607 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  C663_RS15350 (C663_3026) mrpF 3063607..3063891 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C663_RS15355 (C663_3027) mnhG 3063875..3064249 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  C663_RS15360 (C663_3028) yuxO 3064288..3064668 (-) 381 WP_015483631.1 hotdog fold thioesterase -
  C663_RS15365 comA 3064686..3065330 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C663_RS15370 (C663_3030) comP 3065411..3067711 (-) 2301 WP_041518027.1 histidine kinase Regulator
  C663_RS15375 (C663_3031) comX 3067723..3067887 (-) 165 WP_015384519.1 competence pheromone ComX -
  C663_RS15380 (C663_3032) - 3067900..3068760 (-) 861 WP_015483633.1 polyprenyl synthetase family protein -
  C663_RS15385 (C663_3033) degQ 3068945..3069085 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C663_RS21800 - 3069307..3069369 (+) 63 Protein_3096 hypothetical protein -
  C663_RS15390 (C663_3034) - 3069547..3069915 (+) 369 WP_015483634.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=56026 C663_RS15365 WP_003220716.1 3064686..3065330(-) (comA) [Bacillus subtilis XF-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=56026 C663_RS15365 WP_003220716.1 3064686..3065330(-) (comA) [Bacillus subtilis XF-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment