Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SCSC_RS07935 Genome accession   NZ_AP014647
Coordinates   1623165..1624436 (+) Length   423 a.a.
NCBI ID   WP_006270043.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1618165..1629436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS07905 (SCSC_1625) - 1619512..1619658 (-) 147 WP_003070706.1 hypothetical protein -
  SCSC_RS07910 (SCSC_1626) - 1619823..1620566 (-) 744 WP_006270023.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SCSC_RS07915 (SCSC_1627) prmA 1620567..1621520 (-) 954 WP_022524663.1 50S ribosomal protein L11 methyltransferase -
  SCSC_RS07920 (SCSC_1628) - 1621664..1622134 (-) 471 WP_006270018.1 GNAT family N-acetyltransferase -
  SCSC_RS07925 (SCSC_1629) - 1622131..1622583 (-) 453 WP_006270022.1 NUDIX hydrolase -
  SCSC_RS07930 (SCSC_1630) - 1622593..1623063 (-) 471 WP_006270040.1 DUF3013 family protein -
  SCSC_RS07935 (SCSC_1631) rarA 1623165..1624436 (+) 1272 WP_006270043.1 replication-associated recombination protein A Machinery gene
  SCSC_RS07945 (SCSC_1633) - 1624868..1626007 (-) 1140 WP_006270031.1 site-specific integrase -
  SCSC_RS09480 - 1626009..1626140 (-) 132 Protein_1544 DUF3173 family protein -
  SCSC_RS07955 (SCSC_1634) - 1626132..1626383 (-) 252 Protein_1545 replication initiation protein -
  SCSC_RS07960 (SCSC_1635) - 1626413..1626610 (-) 198 WP_006270033.1 hypothetical protein -
  SCSC_RS07965 (SCSC_1636) - 1626804..1627313 (+) 510 WP_006270039.1 helix-turn-helix transcriptional regulator -
  SCSC_RS07970 (SCSC_1637) - 1627429..1628574 (+) 1146 WP_006270025.1 low temperature requirement protein A -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46646.03 Da        Isoelectric Point: 6.4248

>NTDB_id=55993 SCSC_RS07935 WP_006270043.1 1623165..1624436(+) (rarA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MPENLAIRMRPKNIDQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGLIIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQAIQ
TALADTERGFAFPVQLDDDALDFIATSTNGDLRSAFNSLDLAVLSTSADNSGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANIV
IDLALSPKSNSAYVAIDKALSDLRQNGNLAIPRHLRDGHYAGSKELGNAQDYKYPHNYPGNWVQQNYLPEKIKNADYFTP
NENGKYERALGMTKNKIDQLKNN

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=55993 SCSC_RS07935 WP_006270043.1 1623165..1624436(+) (rarA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGCCAGAAAATTTAGCTATCCGCATGCGACCTAAAAATATTGATCAGGTCATCGGTCAGAAACATCTGGTCGGCGAAGG
AAAAATTATTCGTCGCATGGTGGAAGCCAATCGTCTGTCTTCTATGATTCTCTACGGACCGCCCGGCATCGGTAAGACTT
CCATTGCTTCTGCCATCGCTGGTACTACAAAATTTGCTTTTCGGACCTTTAATGCTACCGTTGATAGTAAGAAGCGTCTG
CAAGAGATTGCAGAAGAAGCCAAGTTCTCTGGTGGTTTGGTGCTACTTTTAGATGAGATTCACCGCTTGGATAAGACAAA
GCAGGACTTCCTCCTCCCTCTGTTAGAAAACGGTCTAATCATCATGATTGGTGCCACAACAGAAAATCCTTTTTTCTCCG
TCACTCCCGCTATTCGCAGCCGGGTACAGATTTTCGAGCTGGAGCCTCTGACAAATGACGATATTAAACAAGCTATTCAA
ACAGCCTTGGCAGACACCGAACGAGGCTTTGCTTTTCCTGTCCAATTAGATGATGACGCACTGGACTTCATTGCCACTTC
CACGAATGGAGATCTACGCTCAGCCTTTAATTCTCTAGATTTAGCAGTCCTCTCTACCTCAGCGGATAATTCAGGCGTTC
GCCATATCACTCTGGATATTATGGAAAACAGCCTACAAAAGAGCTACATCACTATGGACAAGGACGGGGATGGTCACTAT
GACGTCCTGTCCGCCTTACAGAAGTCTATTCGGGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCTGGAGACCTTCCCAGCCTCGCACGACGCCTGACGGTCATTGCTTATGAAGACATTGGTTTGGCAAATCCCGATGCTC
AGATTCATACAGTGACCGCACTTGAAGCCGCTCAAAAAATTGGGTTCCCAGAAGCTCGCATCCTCATTGCCAACATTGTC
ATTGACCTAGCACTTTCTCCTAAGTCCAACTCGGCCTACGTAGCCATAGACAAAGCACTCTCTGACTTGCGCCAGAACGG
AAATCTCGCTATCCCTCGCCATCTACGAGATGGTCACTACGCTGGCAGTAAGGAGCTGGGAAATGCGCAGGATTACAAAT
ATCCACATAACTATCCTGGTAATTGGGTACAGCAAAACTACCTTCCTGAAAAAATAAAAAATGCCGATTATTTCACTCCA
AATGAAAATGGAAAGTACGAACGAGCCCTTGGCATGACTAAAAATAAGATTGATCAATTAAAAAATAACTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.287

98.818

0.596

Multiple sequence alignment