Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SCSC_RS07310 Genome accession   NZ_AP014647
Coordinates   1479658..1480446 (-) Length   262 a.a.
NCBI ID   WP_003070508.1    Uniprot ID   F9P7E1
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474658..1485446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS07285 - 1474823..1474993 (-) 171 WP_006270305.1 hypothetical protein -
  SCSC_RS07290 (SCSC_1497) gatA 1474997..1476457 (-) 1461 WP_006270265.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SCSC_RS07295 (SCSC_1498) gatC 1476457..1476759 (-) 303 WP_006270292.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SCSC_RS07300 (SCSC_1499) aspS 1476836..1478572 (-) 1737 WP_006270235.1 aspartate--tRNA ligase -
  SCSC_RS07305 (SCSC_1500) - 1479083..1479658 (-) 576 WP_003031209.1 isochorismatase family cysteine hydrolase -
  SCSC_RS07310 (SCSC_1501) codY 1479658..1480446 (-) 789 WP_003070508.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SCSC_RS07315 (SCSC_1502) - 1480614..1481828 (-) 1215 WP_003070510.1 pyridoxal phosphate-dependent aminotransferase -
  SCSC_RS07320 (SCSC_1503) - 1481980..1482432 (+) 453 WP_003070511.1 universal stress protein -
  SCSC_RS07325 (SCSC_1504) - 1482477..1483865 (-) 1389 WP_006270280.1 Cof-type HAD-IIB family hydrolase -
  SCSC_RS07330 - 1483975..1484432 (+) 458 Protein_1422 asparaginase -
  SCSC_RS07335 - 1484586..1484891 (+) 306 WP_232565282.1 hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29721.06 Da        Isoelectric Point: 5.2508

>NTDB_id=55981 SCSC_RS07310 WP_003070508.1 1479658..1480446(-) (codY) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MANLLAKTRKITSILRRSDERLQEELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHALSIFPVETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKRRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=55981 SCSC_RS07310 WP_003070508.1 1479658..1480446(-) (codY) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGGCAAACTTATTAGCAAAAACACGAAAAATTACATCTATTTTGCGCCGTTCAGATGAGCGCTTACAGGAAGAATTGCC
TTACAATGCTATTACTCAGCAGTTAGCTGAGATTATGGATTGCAATGCTTGTATTGTAAACAGCAAGGGGCGTCTTTTGG
GGTATTTTATGCGCTACAAGACGAATAATGACCGGGTGGAAGCATTTTATCAAACAAAAATCTTCCCAGAAGAGTATGTT
CGCACAGCGAATTTGATGTATGATACAGAAGCTAATCTTCCTGTCAATCATGCTTTATCTATTTTTCCAGTCGAAACCAA
AGATGAATTTCCAGATGGCTTGACGACGATTTCGCCTATTCATGTATCAGGGATTCGCTTAGGAACATTGATTGTTTGGC
GAAATGATAAAGAATTTGATGATGATGACTTGATCTTAGTTGAAATTGCAAGTACAGTAGTTGGGATTCAGCTACTCAAC
TTCCAACGAGAAGAAGATGAAAAAAATATTCGACGTCGAACAGCCGTAACCATGGCTGTAAATACGCTATCTTATTCAGA
ATTACGAGCTGTTTCAGCTATTTTAGGTGAACTAAATGGTAATGAAGGACAGTTGACAGCATCGGTCATTGCAGATCGTA
TTGGGATTACTCGCTCAGTGATTGTCAATGCTTTGCGTAAACTAGAGAGTGCAGGCATTATTGAGAGTCGTTCTTTAGGA
ATGAAAGGAACCTACCTTAAAGTCCTTATTCCCGATGTCTTTGAAGAGATTAAAAGGAGAGACTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P7E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473