Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KEC47_RS07965 Genome accession   NZ_CP073656
Coordinates   1619507..1620286 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Y816     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1614507..1625286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC47_RS07945 (KEC47_07945) trmFO 1615194..1616501 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KEC47_RS07950 (KEC47_07950) xerC 1616571..1617488 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  KEC47_RS07955 (KEC47_07955) hslV 1617504..1618049 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  KEC47_RS07960 (KEC47_07960) hslU 1618057..1619469 (+) 1413 WP_255219919.1 HslU--HslV peptidase ATPase subunit -
  KEC47_RS07965 (KEC47_07965) codY 1619507..1620286 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KEC47_RS07970 (KEC47_07970) flgB 1620638..1621027 (+) 390 WP_176283317.1 flagellar basal body rod protein FlgB -
  KEC47_RS07975 (KEC47_07975) flgC 1621027..1621479 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  KEC47_RS07980 (KEC47_07980) fliE 1621490..1621810 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  KEC47_RS07985 (KEC47_07985) fliF 1621853..1623463 (+) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  KEC47_RS07990 (KEC47_07990) fliG 1623476..1624492 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  KEC47_RS07995 (KEC47_07995) fliH 1624485..1625240 (+) 756 WP_077722194.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=559727 KEC47_RS07965 WP_003154263.1 1619507..1620286(+) (codY) [Bacillus velezensis strain Y816]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=559727 KEC47_RS07965 WP_003154263.1 1619507..1620286(+) (codY) [Bacillus velezensis strain Y816]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471