Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SCSC_RS04850 Genome accession   NZ_AP014647
Coordinates   980232..981980 (-) Length   582 a.a.
NCBI ID   WP_006269410.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 975232..986980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS04835 (SCSC_1000) - 975286..977463 (+) 2178 WP_006269406.1 ABC transporter substrate-binding protein/permease -
  SCSC_RS04840 (SCSC_1001) - 977463..978203 (+) 741 WP_006269402.1 amino acid ABC transporter ATP-binding protein -
  SCSC_RS04845 (SCSC_1002) - 978578..980113 (+) 1536 WP_006269421.1 ATP-binding cassette domain-containing protein -
  SCSC_RS04850 (SCSC_1003) rcrQ 980232..981980 (-) 1749 WP_006269410.1 ABC transporter ATP-binding protein Regulator
  SCSC_RS04855 (SCSC_1004) - 981961..983706 (-) 1746 WP_006269393.1 ABC transporter ATP-binding protein -
  SCSC_RS04860 (SCSC_1005) - 983920..984717 (-) 798 WP_006269368.1 formate/nitrite transporter family protein -
  SCSC_RS04865 (SCSC_1006) - 984893..985600 (-) 708 WP_003068871.1 glucosaminidase domain-containing protein -
  SCSC_RS04870 (SCSC_1007) yihA 985925..986512 (-) 588 WP_006269383.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65199.82 Da        Isoelectric Point: 8.5109

>NTDB_id=55968 SCSC_RS04850 WP_006269410.1 980232..981980(-) (rcrQ) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKMRYSKSSLKCLASDLLQQRWLFLLATIGTIVQVALTIYLPILIGNAVDSVLLSDASQHLLPILSKMGMVIVANTAIQW
LNPLIYNQLIYSYSQKLRDAVIQKIHRLPLAYLDCQGSGDLVSRLTTDVEQLNNGLLMVFNQFFVGVLTILVTIVTMARI
DFFMMMLVLLLTPLSMLIARFIARKSYKLFQKQTTARGLQTQLIEESLSQESLIQSFNAQEQFIASFTKGNESYANYSQK
AIFYSSTVNPATRFVNALIYAIVVGFGAVRIINGSSFTVGQLVTFLNYVNQYTKPFNDISSVMAELQSALACAERLYMIL
DEKEVVETGKEELTSEAVRGAIRFEHVRFGYEKDKPLIHDLNMTVPAGSKVAIVGPTGAGKSTLINLLMRFYNVDAGKIK
LDDRDITNYTRVSFRRQFGMVLQETWLKKTTIHDNIAFGRPEASREEVIEAAKAANAHFFIQQLPHGYDTYLADAGDSLS
QGQRQLLTIARVFLAVPKILILDEATSSIDTRTEALIQKAFNKLMVGRTSFIIAHRLSTIQNADIILVLVDGDIVEHGSH
QELMQAKGMYYQMQTAQESLVI

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=55968 SCSC_RS04850 WP_006269410.1 980232..981980(-) (rcrQ) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAAATGAGGTATTCTAAAAGTAGTTTAAAATGCCTTGCAAGTGATTTATTGCAGCAGCGCTGGCTTTTCCTACTAGC
TACAATTGGAACGATTGTTCAGGTTGCCTTGACCATTTATTTGCCGATTTTGATTGGAAATGCAGTTGATAGTGTTTTAC
TTTCCGATGCAAGTCAGCATTTGCTGCCAATTCTCTCGAAAATGGGGATGGTGATTGTTGCCAATACAGCGATTCAATGG
CTCAATCCTTTAATCTATAATCAGTTGATTTATAGTTATAGTCAGAAACTTCGGGACGCAGTTATTCAAAAAATTCATCG
ACTTCCCTTAGCTTATCTTGATTGTCAAGGGAGTGGTGATTTAGTGAGTCGCTTGACGACGGATGTGGAGCAGTTAAATA
ATGGTCTGCTCATGGTTTTCAATCAGTTTTTTGTAGGCGTGTTAACTATTCTTGTAACGATTGTGACAATGGCAAGGATT
GACTTTTTCATGATGATGTTAGTCTTGCTTTTAACTCCCTTATCTATGCTGATTGCACGTTTTATAGCCCGTAAAAGCTA
CAAGCTGTTTCAAAAACAAACGACGGCACGAGGGCTTCAGACACAGCTCATTGAAGAAAGTCTCTCTCAAGAAAGTTTGA
TTCAAAGTTTTAATGCCCAAGAGCAGTTCATTGCGAGCTTTACAAAGGGGAATGAAAGCTATGCGAACTATTCTCAGAAA
GCGATTTTCTATTCCTCTACTGTCAATCCAGCGACTCGCTTCGTGAATGCTCTTATTTATGCTATTGTTGTTGGATTTGG
TGCGGTTCGTATCATTAACGGCTCTAGTTTCACAGTTGGACAATTAGTGACATTCTTAAATTATGTCAACCAATACACCA
AGCCATTCAACGATATTTCGTCTGTTATGGCTGAATTACAAAGCGCCCTTGCTTGTGCAGAGCGCTTGTACATGATTTTA
GATGAAAAAGAAGTTGTAGAAACTGGAAAAGAAGAACTCACGAGTGAAGCAGTACGGGGTGCGATTCGTTTTGAGCACGT
CCGTTTTGGTTATGAAAAAGATAAACCTTTGATTCACGATTTAAACATGACCGTTCCAGCAGGAAGCAAAGTTGCTATTG
TCGGACCAACTGGTGCTGGAAAATCCACTTTAATCAATCTCCTCATGCGTTTTTATAATGTGGATGCGGGCAAGATAAAG
CTAGACGATCGAGATATTACAAATTATACTCGAGTGTCCTTCCGCCGGCAGTTTGGCATGGTGTTACAAGAAACGTGGCT
GAAAAAGACCACGATCCATGATAATATTGCTTTTGGGCGACCAGAGGCCAGCCGAGAAGAAGTAATTGAAGCAGCTAAAG
CTGCCAATGCTCATTTCTTTATTCAGCAATTGCCGCATGGCTATGATACTTATCTAGCAGATGCAGGAGATTCTTTGTCA
CAAGGACAACGCCAGCTATTGACCATTGCGCGTGTTTTTCTAGCGGTTCCTAAAATCCTGATTTTAGACGAAGCAACTTC
ATCCATTGATACACGAACCGAAGCGCTTATTCAAAAAGCTTTTAATAAGCTAATGGTAGGAAGAACCAGTTTTATCATTG
CTCATCGTCTGTCTACTATTCAAAATGCAGATATCATCTTGGTTTTGGTTGATGGTGATATTGTCGAACATGGCAGTCAT
CAGGAGTTGATGCAAGCGAAAGGTATGTATTATCAAATGCAGACAGCGCAGGAAAGTTTAGTTATTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(25-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.206

99.485

0.39

Multiple sequence alignment