Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   KEM15_RS06100 Genome accession   NZ_CP073632
Coordinates   1183653..1184492 (-) Length   279 a.a.
NCBI ID   WP_274503965.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1178653..1189492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS06085 (KEM15_05985) pheT 1178794..1181193 (-) 2400 WP_274503963.1 phenylalanine--tRNA ligase subunit beta -
  KEM15_RS06090 (KEM15_05990) - 1181195..1181716 (-) 522 WP_274504934.1 N-acetyltransferase -
  KEM15_RS06095 (KEM15_05995) pheS 1182358..1183401 (-) 1044 WP_174845671.1 phenylalanine--tRNA ligase subunit alpha -
  KEM15_RS06100 (KEM15_06000) endA 1183653..1184492 (-) 840 WP_274503965.1 DNA/RNA non-specific endonuclease Machinery gene
  KEM15_RS06105 (KEM15_06005) - 1184522..1184713 (-) 192 WP_274503967.1 DNA-directed RNA polymerase subunit beta -
  KEM15_RS06110 (KEM15_06010) murA 1184706..1185989 (-) 1284 WP_274503968.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KEM15_RS06115 (KEM15_06015) - 1186012..1186239 (-) 228 WP_130554297.1 DUF1146 family protein -
  KEM15_RS06120 (KEM15_06020) ugpC 1186423..1187529 (-) 1107 WP_274503970.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  KEM15_RS06125 (KEM15_06025) - 1187530..1188267 (-) 738 WP_274503971.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30111.36 Da        Isoelectric Point: 6.4998

>NTDB_id=559516 KEM15_RS06100 WP_274503965.1 1183653..1184492(-) (endA) [Streptococcus parasuis strain NN1]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNRSKASEGTPSQELANSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREATGNGRTSWTPAGWHQIHDLPGEYDHA
VDRGHLLGYALIGGLAGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=559516 KEM15_RS06100 WP_274503965.1 1183653..1184492(-) (endA) [Streptococcus parasuis strain NN1]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCGGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAATTCAGTATTGACAGAAGATGTAAAAAAGCAACTAGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTTCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
CAACTGGTAATGGACGTACGTCATGGACTCCTGCAGGCTGGCACCAAATTCATGATTTGCCAGGGGAATATGATCATGCA
GTTGATCGTGGACATCTTTTAGGCTATGCCTTGATTGGTGGTCTTGCTGGATTTGATGCCTCAACAAGTAATCCCAAAAA
CATAGCGGTTCAAACTGCCTGGTCTAATCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAAATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGTCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.882

91.398

0.602
  endA Streptococcus pneumoniae D39

65.882

91.398

0.602
  endA Streptococcus pneumoniae R6

65.882

91.398

0.602
  endA Streptococcus pneumoniae TIGR4

65.882

91.398

0.602