Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KEC48_RS00565 Genome accession   NZ_CP073631
Coordinates   110023..111846 (+) Length   607 a.a.
NCBI ID   WP_087358049.1    Uniprot ID   A0A1Y4SZK4
Organism   Clostridium sp. C1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 105023..116846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC48_RS00550 (KEC48_00550) - 106015..107256 (+) 1242 WP_211963728.1 glutamate-5-semialdehyde dehydrogenase -
  KEC48_RS00555 (KEC48_00555) - 107383..107811 (+) 429 WP_211963730.1 MarR family transcriptional regulator -
  KEC48_RS00560 (KEC48_00560) - 107808..110030 (+) 2223 WP_211963732.1 ABC transporter ATP-binding protein -
  KEC48_RS00565 (KEC48_00565) rcrQ 110023..111846 (+) 1824 WP_087358049.1 ABC transporter ATP-binding protein Regulator
  KEC48_RS00570 (KEC48_00570) - 112029..112253 (+) 225 WP_087358050.1 acyl carrier protein -
  KEC48_RS00575 (KEC48_00575) accB 112296..112706 (+) 411 WP_211963734.1 acetyl-CoA carboxylase biotin carboxyl carrier protein -
  KEC48_RS00580 (KEC48_00580) accC 112716..114083 (+) 1368 WP_211963736.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  KEC48_RS00585 (KEC48_00585) accD 114067..114936 (+) 870 WP_087358053.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  KEC48_RS00590 (KEC48_00590) - 114933..115853 (+) 921 WP_087358054.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  KEC48_RS00595 (KEC48_00595) - 115850..116824 (+) 975 WP_087358055.1 beta-ketoacyl-ACP synthase III -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67904.88 Da        Isoelectric Point: 5.4408

>NTDB_id=559479 KEC48_RS00565 WP_087358049.1 110023..111846(+) (rcrQ) [Clostridium sp. C1]
MPRGHMGGRQMSNEKAKDFKGTIQKLFAHLRPYYVKFIFIFIFAAGSTIFSIFGPKVLAQATDKLSEGIMAKVSHTGGID
FDAIFQILIFLVCIYLFSALLNYIQGFLTSGISQKVAYDFRKEISEKMDRLPLSYFDTHSSGDTLSRVTNDVDLIAQSLN
QSLTQVVTSSVTVIGILIMMLTISIPMTLLALCVLPISMFLMTKIMKRTQKYFISQQTSLGNVNGHIEEMYGAHQVVKAF
NGEEDSVARFEDYNDDLYNSAWKSQFFSGLMQPLTTFVGNIGYVGVCLLGGFLASGQMISIGDIQAFIQYVRQFNQPITQ
LAQIMNQLQSTAAAAERVFEFLDEPEMEEEHALVTSDQVHNMQGSVTFNHVQFGYTPEKTIIHDFSMHVHAGQSVAIVGP
TGAGKTTIVKLLMRFYELNGGHILIDGKDITQFARSDLRSLFGMVLQDTWLFGGTIRENLKYGKLDATDEEMYEACRLAY
ADHFINTLEDGYDTIINEESNNISQGQKQLLTIARAFLANPKILILDEATSSVDTRTEVLIQRGMDKLMEGRTSFIIAHR
LSTIKDANTIIVMKDGDIVELGNHESLLAKNGFYAELYQSQFESSHE

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=559479 KEC48_RS00565 WP_087358049.1 110023..111846(+) (rcrQ) [Clostridium sp. C1]
ATGCCTAGAGGACACATGGGTGGTAGACAGATGTCTAATGAAAAAGCTAAGGACTTTAAGGGAACGATTCAAAAATTATT
TGCACATTTACGTCCCTATTATGTGAAATTTATATTTATCTTTATATTTGCTGCTGGATCAACAATCTTTTCTATTTTTG
GACCGAAAGTATTGGCTCAGGCAACAGATAAATTAAGTGAAGGAATAATGGCTAAGGTTTCACATACAGGTGGTATTGAT
TTTGATGCAATCTTTCAAATTCTTATTTTCCTTGTCTGTATTTATTTGTTCAGTGCTTTATTAAATTATATTCAAGGATT
TTTAACTTCAGGTATATCTCAAAAAGTTGCTTATGATTTTAGAAAAGAAATTTCAGAAAAAATGGATCGTTTGCCATTGA
GTTATTTTGATACACATTCAAGTGGGGATACCTTATCACGTGTAACCAATGATGTTGATTTGATTGCGCAATCATTGAAT
CAGAGTTTAACACAGGTGGTGACATCTTCCGTTACAGTTATTGGAATTTTAATTATGATGCTGACAATCAGTATTCCAAT
GACATTATTAGCGTTATGTGTGTTACCTATTTCAATGTTTTTAATGACTAAAATCATGAAAAGAACACAAAAGTACTTTA
TTTCACAACAAACAAGTTTAGGAAATGTGAATGGTCACATTGAAGAAATGTATGGTGCTCATCAAGTGGTAAAAGCATTT
AATGGCGAAGAAGATTCGGTCGCACGTTTTGAAGACTATAATGATGATTTATATAACTCTGCATGGAAATCACAGTTCTT
TTCTGGCTTGATGCAACCACTTACAACATTTGTTGGAAATATTGGTTATGTGGGTGTGTGTTTGTTAGGTGGATTTTTAG
CCAGTGGACAAATGATTTCGATTGGGGATATTCAGGCATTTATTCAATATGTGCGTCAATTTAACCAACCGATTACTCAA
CTTGCTCAAATTATGAATCAATTACAATCGACTGCAGCTGCTGCAGAACGTGTGTTTGAATTTTTAGATGAACCAGAGAT
GGAAGAAGAACATGCTTTGGTCACTAGTGACCAAGTCCATAACATGCAAGGAAGTGTTACATTCAACCATGTTCAATTTG
GCTATACGCCAGAAAAAACAATCATTCACGACTTTTCTATGCATGTTCATGCTGGACAAAGTGTTGCAATTGTTGGACCA
ACAGGTGCGGGGAAAACAACGATTGTCAAATTGTTAATGCGTTTTTATGAATTGAATGGTGGGCATATCTTAATTGATGG
AAAAGATATTACACAATTTGCCAGAAGTGATTTAAGAAGTTTGTTTGGTATGGTTTTACAAGATACATGGTTATTTGGTG
GAACGATTCGTGAAAACTTAAAATATGGAAAATTAGATGCAACAGATGAAGAAATGTATGAAGCCTGTCGATTGGCATAT
GCTGATCATTTTATTAATACTTTAGAAGATGGTTATGATACAATCATTAATGAAGAATCTAATAATATTTCACAGGGACA
AAAACAATTATTAACTATAGCTAGAGCTTTTCTTGCGAATCCTAAAATCTTGATTTTAGATGAAGCAACTTCATCTGTTG
ATACAAGAACAGAAGTATTGATACAAAGAGGTATGGATAAATTGATGGAAGGAAGAACAAGCTTTATTATTGCTCATCGA
CTTTCTACGATTAAGGATGCTAATACGATTATTGTCATGAAAGATGGCGATATTGTAGAATTAGGAAACCATGAGTCATT
ACTTGCAAAAAATGGATTCTATGCCGAATTGTATCAATCACAATTTGAATCAAGTCATGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-317)

ABC transporter (ABC_tran)

(383-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y4SZK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50

97.529

0.488