Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SCSC_RS01125 Genome accession   NZ_AP014647
Coordinates   212260..214614 (-) Length   784 a.a.
NCBI ID   WP_006270635.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 207260..219614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS01110 (SCSC_0227) - 207483..208259 (-) 777 WP_006270637.1 threonine/serine exporter family protein -
  SCSC_RS01115 (SCSC_0228) pflB 208360..210675 (-) 2316 WP_006270642.1 formate C-acetyltransferase -
  SCSC_RS01120 (SCSC_0229) dinB 210911..211978 (+) 1068 WP_006270639.1 DNA polymerase IV -
  SCSC_RS01125 (SCSC_0230) recD/recD2/recDB 212260..214614 (-) 2355 WP_006270635.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SCSC_RS01130 (SCSC_0231) lepB 214843..215457 (-) 615 WP_006269005.1 signal peptidase I -
  SCSC_RS01135 (SCSC_0232) rnhC 215461..216351 (-) 891 WP_006270627.1 ribonuclease HIII -
  SCSC_RS01140 (SCSC_0233) - 216437..216742 (+) 306 WP_003070932.1 hypothetical protein -
  SCSC_RS01145 (SCSC_0234) - 216739..217287 (+) 549 WP_006270633.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88616.84 Da        Isoelectric Point: 4.6580

>NTDB_id=55919 SCSC_RS01125 WP_006270635.1 212260..214614(-) (recD/recD2/recDB) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MEFYFSGTIERIIFENPSSFFRILLLNIDDTDADFDDFEIIVTGTMADIIEGEDYTFWGNLVQHPKYGEQLKLIRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLHDIVGLSAKNREAFIMKLRQNYGTERVLAKLSEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELAPNSVADELAHLIEEDKVQNVDTKIFENSLFFAEEGICNNLLRILEKENQNKYEPEKIEAAI
TQIEIEFAISYDVIQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLNGLDLRKSHDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPTDFIEKKADRSYFEARSEHIPQMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAEKEQLVFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVQN
TGTTRKTYLKERFEDFLNVEKVIHTSVDNLETTVEKYILTEENFLKINPMIGITDEDIQSVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=55919 SCSC_RS01125 WP_006270635.1 212260..214614(-) (recD/recD2/recDB) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGGAATTTTACTTTTCAGGTACCATCGAACGTATTATCTTTGAAAATCCCAGCAGTTTTTTTCGGATTCTGTTGCTAAA
TATTGACGACACCGATGCGGATTTTGATGATTTTGAGATTATTGTCACCGGCACTATGGCAGATATTATAGAGGGGGAAG
ACTATACTTTCTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAGCTCAAACTAATACGCTATGAGCGTGCTAAA
CCAACCAGCAAAGGCTTGGTCAAATATTTTTCAAGCGACCATTTTAAAGGAATCGGTGTAAAAACAGCACAAAAAATTGT
GGATCTCTACGGCGATAACACGATTGATAAGGTCTTGGCAGAACCCGAAAAATTACATGATATTGTAGGCCTTTCTGCTA
AAAATCGCGAAGCCTTTATTATGAAACTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATCTGAATACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
ATTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAACCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAGCTTCTGGAACATACGATTGAACTTCTGGAAAGCTCCCGACAGATCGAACTAGCTCCAAATTCTGTTGCAGATGAGCT
AGCTCATTTGATTGAAGAAGATAAAGTCCAAAATGTCGATACGAAGATTTTTGAAAACAGTCTCTTTTTTGCTGAAGAAG
GAATCTGCAACAATCTCTTACGCATTCTGGAGAAGGAAAATCAAAATAAATATGAACCGGAAAAAATCGAAGCTGCTATT
ACCCAAATCGAAATTGAGTTTGCCATTTCCTATGATGTGATTCAAAAACAAGCGATTTGTGACGCTATCAATCACAAAAT
TTTTATCCTAACGGGTGGTCCCGGAACGGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTACGCTCTGCTGAATG
GGTTGGATTTGCGTAAATCTCACGATTTGCCTATCCTGCTAGCAGCTCCGACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCTACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACTAGCCATTTAGACGATTA
TTTGGACGCAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAACATTT
CATCAAACACCAAACTCCTAATTGTCGGAGATGCTGATCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCACAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGATTCCACTATCGTTACCTTAGC
CAGTCAGATTCAAAAAGGCATCCTGCCAACTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCGTAGTG
AACATATTCCGCAGATGATTGAACGTATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTACTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAAAAGA
ACAACTCGTCTTTGAAGCAACGGATTGCCAATACCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAGCA
ATGTGTTCAACGGTGACTTGGGTTATATCACCGATTTGCTGCCAGCAAAATATACGGACTCTAAACAGGACGAATTGACT
ATCAACTTTGACGGCAATGAGATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTAGTCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGCTTTTGCTGTCCAAAAT
ACTGGGACAACACGTAAAACCTATCTGAAAGAGCGCTTTGAAGACTTTCTCAATGTAGAAAAAGTTATACACACTTCTGT
GGATAATTTGGAAACAACTGTGGAAAAATATATCTTGACTGAGGAAAATTTCTTGAAAATCAACCCTATGATTGGAATAA
CGGATGAGGATATTCAAAGTGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

AAA domain (AAA_30)

(333-528)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.184

94.77

0.39

Multiple sequence alignment