Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KDH82_RS09035 Genome accession   NZ_CP073350
Coordinates   2085910..2086650 (-) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain LyG-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080910..2091650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDH82_RS09015 (KDH82_09020) - 2081788..2082369 (+) 582 WP_004583806.1 sigma-70 family RNA polymerase sigma factor -
  KDH82_RS09020 (KDH82_09025) - 2082467..2082607 (+) 141 WP_021663364.1 hypothetical protein -
  KDH82_RS09025 (KDH82_09030) - 2082789..2083691 (+) 903 WP_211599873.1 nucleotidyltransferase -
  KDH82_RS09030 (KDH82_09035) - 2083710..2085779 (+) 2070 WP_211599874.1 M13 family metallopeptidase -
  KDH82_RS09035 (KDH82_09040) comF 2085910..2086650 (-) 741 WP_005875257.1 ComF family protein Machinery gene
  KDH82_RS09040 (KDH82_09045) - 2086634..2087122 (-) 489 WP_077083423.1 regulatory protein RecX -
  KDH82_RS09045 (KDH82_09050) prmC 2087119..2088000 (-) 882 WP_211599875.1 peptide chain release factor N(5)-glutamine methyltransferase -
  KDH82_RS09050 (KDH82_09055) ribD 2088025..2089017 (+) 993 WP_099896269.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  KDH82_RS09060 (KDH82_09065) aspS 2089448..2091211 (+) 1764 WP_077082536.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=559156 KDH82_RS09035 WP_005875257.1 2085910..2086650(-) (comF) [Porphyromonas gingivalis strain LyG-2]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=559156 KDH82_RS09035 WP_005875257.1 2085910..2086650(-) (comF) [Porphyromonas gingivalis strain LyG-2]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATAGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAGGGATTAAGTCGTGTAACGGGAATACCTGTTCAAGAAGGTTTGCGT
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1