Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KCI35_RS01030 Genome accession   NZ_CP073348
Coordinates   238143..238883 (+) Length   246 a.a.
NCBI ID   WP_088528451.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain GMU202011     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 233143..243883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCI35_RS01005 aspS 233585..235348 (-) 1764 WP_097633147.1 aspartate--tRNA ligase -
  KCI35_RS01015 ribD 235779..236771 (-) 993 WP_211604934.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  KCI35_RS01020 prmC 236796..237677 (+) 882 WP_211604935.1 peptide chain release factor N(5)-glutamine methyltransferase -
  KCI35_RS01025 - 237674..238159 (+) 486 WP_012457381.1 regulatory protein RecX -
  KCI35_RS01030 comF 238143..238883 (+) 741 WP_088528451.1 ComF family protein Machinery gene
  KCI35_RS01035 - 239014..241083 (-) 2070 WP_054191318.1 M13 family metallopeptidase -
  KCI35_RS01040 - 241102..242004 (-) 903 WP_211604936.1 nucleotidyltransferase -
  KCI35_RS10550 - 242186..242320 (-) 135 WP_004583805.1 hypothetical protein -
  KCI35_RS01045 - 242424..243005 (-) 582 WP_004583806.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27504.01 Da        Isoelectric Point: 10.1282

>NTDB_id=559138 KCI35_RS01030 WP_088528451.1 238143..238883(+) (comF) [Porphyromonas gingivalis strain GMU202011]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIARGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=559138 KCI35_RS01030 WP_088528451.1 238143..238883(+) (comF) [Porphyromonas gingivalis strain GMU202011]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAACGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATATAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACGGGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTCCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

99.593

100

0.996