Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KD050_RS02535 Genome accession   NZ_CP073315
Coordinates   488202..490628 (-) Length   808 a.a.
NCBI ID   WP_211894704.1    Uniprot ID   -
Organism   Psychrobacillus sp. INOP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 483202..495628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD050_RS02515 (KD050_02515) - 483911..484207 (-) 297 WP_211894702.1 DUF1292 domain-containing protein -
  KD050_RS02520 (KD050_02520) ruvX 484219..484638 (-) 420 WP_211896182.1 Holliday junction resolvase RuvX -
  KD050_RS02525 (KD050_02525) - 484641..484907 (-) 267 WP_090563918.1 IreB family regulatory phosphoprotein -
  KD050_RS02530 (KD050_02530) alaS 484985..487618 (-) 2634 WP_211894703.1 alanine--tRNA ligase -
  KD050_RS02535 (KD050_02535) recD2 488202..490628 (-) 2427 WP_211894704.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KD050_RS02540 (KD050_02540) - 490650..491306 (-) 657 WP_211894705.1 lipopolysaccharide assembly protein LapB -
  KD050_RS02545 (KD050_02545) mnmA 491321..492433 (-) 1113 WP_211894706.1 tRNA 2-thiouridine(34) synthase MnmA -
  KD050_RS02550 (KD050_02550) - 492525..493655 (-) 1131 WP_211894707.1 cysteine desulfurase family protein -
  KD050_RS02555 (KD050_02555) cymR 493666..494088 (-) 423 WP_211894708.1 cysteine metabolism transcriptional regulator CymR -
  KD050_RS02560 (KD050_02560) - 494226..495512 (+) 1287 WP_211894709.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 90855.28 Da        Isoelectric Point: 5.2384

>NTDB_id=558990 KD050_RS02535 WP_211894704.1 488202..490628(-) (recD2) [Psychrobacillus sp. INOP01]
MTNEINNEKQFITGRPIVSIFHNPQNLFSIIKVKIKSTNTTYTDKEVIVSGYFPPLVLEEPYKFIGYIKNHPKYGVQFQV
ETFQKEVPATEQGIIHYLSSDMFTGIGRKTAEQIVKKLGPNAINKILDDPEALDVVPRLSEEKKQTLRAVLEQNLGLEKV
MIQLNEWGFGPQIAMKIYQAYREETITVLTKNPFRLIEEVEGVGFVRADELGYKLGIQGNHPDRIKAAVYHLLQSASLGE
GHVFLYAEQLLESVKKLLENAQREEIPYEAISKCCIELAEESRIVGEVNRFYIPSLYYSEVGIGSKIETLLAENDTHHQF
PLAEMKKHLGGIEERLGVQYAPTQINAIETALNASMTLLTGGPGTGKTTVVRGIVELYAELHGLSLDPKEWVKDKKPFPV
VLAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEDADVEGKEIEGKLIIIDETSMLDTWLGYQLLKAIPKDAQVIFVGDQ
DQLPPVGPGQVLKDLLASKRIPTVELKDIYRQAEGSSIIELAHEMKQGMVPASLLDKTKDRSFIKATTDQIPKVVEQVLK
SALSKGHSIREMQVLAPMYRGPAGIDALNKMIQEMVNPNTDGKRKEMVFGETIYRIGDKVLQLVNQPESHVFNGDMGEVI
SIFRAAETVEKKEMLIVSFDGNEVTYEKNDLNQLTLAYCCSVHKSQGSEFQTVIMPITRSYMKMLRRNLLYTGITRAKNF
LILCGDPEVFKFGVQRTDDLQRLTTLKDRLSNVEESEQEDKEIVKELESESDGTQTDFTYLTAENYHKIDPLIGMNGVTP
YQFMDTDN

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=558990 KD050_RS02535 WP_211894704.1 488202..490628(-) (recD2) [Psychrobacillus sp. INOP01]
ATGACCAACGAAATAAATAATGAAAAACAATTTATTACGGGTCGTCCTATCGTTTCGATTTTTCATAACCCTCAAAACTT
ATTCTCAATTATTAAAGTGAAAATCAAATCCACCAACACTACATACACAGACAAAGAAGTAATTGTATCTGGTTATTTCC
CTCCATTAGTACTGGAAGAACCGTATAAATTTATTGGATATATTAAAAATCACCCGAAATATGGCGTTCAATTTCAAGTG
GAAACGTTCCAAAAAGAAGTACCAGCGACAGAGCAAGGAATCATTCATTATCTTTCGAGCGATATGTTCACTGGTATAGG
TCGCAAAACAGCAGAACAAATTGTAAAAAAACTCGGACCAAACGCCATTAACAAAATATTAGATGATCCAGAAGCACTAG
ATGTAGTGCCACGTCTTTCAGAAGAGAAAAAACAGACACTACGTGCAGTATTAGAACAAAATTTAGGTTTGGAAAAAGTG
ATGATTCAACTCAATGAATGGGGATTTGGCCCTCAAATAGCTATGAAAATCTATCAAGCCTATAGAGAAGAAACAATCAC
CGTCCTTACTAAAAATCCATTTCGTCTAATTGAAGAGGTAGAGGGGGTAGGTTTCGTTCGAGCAGACGAGCTTGGCTATA
AATTAGGTATTCAAGGTAACCACCCAGATCGTATTAAAGCGGCGGTATATCACTTGCTACAATCTGCTTCGCTAGGAGAA
GGTCATGTATTTTTATATGCAGAGCAATTATTAGAATCAGTTAAAAAGCTATTAGAAAATGCTCAGCGTGAAGAGATCCC
GTATGAGGCAATAAGCAAATGCTGTATTGAACTTGCTGAAGAAAGTCGGATAGTCGGAGAGGTGAATCGTTTTTATATTC
CTTCTTTATATTATTCCGAAGTTGGAATTGGTTCTAAAATTGAAACACTTCTAGCTGAAAATGATACACATCATCAATTT
CCTTTAGCTGAGATGAAAAAGCATCTTGGGGGTATTGAAGAACGTTTAGGGGTGCAATATGCCCCGACACAGATTAATGC
GATTGAAACAGCATTAAATGCAAGTATGACCTTACTAACGGGAGGTCCTGGAACTGGAAAAACAACCGTTGTTCGAGGGA
TTGTCGAGCTATATGCAGAGTTACATGGACTCTCACTGGATCCGAAGGAGTGGGTAAAAGACAAGAAACCATTTCCGGTA
GTTTTAGCTGCTCCAACTGGTAGAGCGGCCAAACGACTAAGTGAATCGACAGAATTACCGGCTATGACTATTCATAGATT
ATTAGGCTTTAATGGTCAAGAAGATGCGGATGTCGAAGGCAAAGAGATAGAAGGTAAACTAATTATCATTGACGAAACAT
CTATGTTAGACACCTGGTTAGGATATCAACTATTAAAGGCTATACCAAAGGATGCCCAAGTTATTTTTGTAGGGGACCAA
GATCAACTCCCACCAGTAGGACCCGGGCAAGTATTAAAGGATTTACTTGCTTCCAAACGAATCCCTACAGTTGAACTAAA
GGATATTTATCGACAAGCAGAAGGGTCCTCGATTATAGAACTGGCACATGAAATGAAGCAAGGGATGGTCCCAGCATCTC
TATTAGACAAGACAAAGGATCGATCCTTTATAAAAGCTACTACTGATCAGATCCCGAAAGTGGTGGAACAAGTATTAAAA
AGTGCATTATCCAAAGGACATTCCATTCGAGAAATGCAAGTATTAGCACCTATGTATAGAGGTCCGGCAGGTATTGACGC
TCTTAACAAAATGATCCAAGAAATGGTCAATCCTAATACGGACGGAAAGCGAAAAGAAATGGTATTTGGTGAAACTATCT
ACCGTATTGGGGATAAAGTTCTACAACTAGTCAATCAACCAGAGAGTCATGTGTTTAATGGAGATATGGGGGAAGTTATT
AGTATTTTCAGAGCTGCAGAAACAGTCGAGAAAAAAGAGATGTTAATAGTTTCATTTGATGGCAATGAAGTAACCTATGA
AAAAAATGATTTGAATCAGCTTACACTTGCTTATTGCTGTTCAGTCCATAAATCACAAGGTAGTGAATTTCAAACGGTTA
TTATGCCCATAACAAGAAGTTATATGAAGATGTTAAGAAGAAATTTACTTTATACAGGAATTACTCGTGCTAAAAACTTT
CTCATATTATGTGGAGATCCTGAAGTGTTTAAGTTCGGAGTTCAAAGAACCGATGATCTTCAGCGATTAACAACATTAAA
AGATCGTTTATCTAATGTAGAAGAATCAGAGCAAGAAGATAAAGAAATAGTAAAAGAATTAGAATCAGAATCAGATGGGA
CTCAAACTGACTTCACATACTTAACTGCTGAAAATTATCATAAGATAGACCCTCTTATTGGGATGAATGGTGTCACGCCA
TATCAATTTATGGATACAGACAATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-244)

AAA domain (AAA_30)

(340-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.806

99.134

0.543