Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J8N01_RS07835 Genome accession   NZ_CP073301
Coordinates   1133506..1134747 (+) Length   413 a.a.
NCBI ID   WP_053487691.1    Uniprot ID   -
Organism   Priestia megaterium strain HT517     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1128506..1139747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N01_RS07810 (J8N01_07725) ymfI 1129729..1130454 (+) 726 WP_013058810.1 elongation factor P 5-aminopentanone reductase -
  J8N01_RS07815 (J8N01_07730) - 1130520..1130780 (+) 261 WP_013058809.1 DUF3243 domain-containing protein -
  J8N01_RS07820 (J8N01_07735) - 1130994..1131785 (+) 792 WP_013058808.1 DUF3388 domain-containing protein -
  J8N01_RS07825 (J8N01_07740) - 1131798..1132760 (+) 963 WP_013058807.1 helix-turn-helix domain-containing protein -
  J8N01_RS07830 (J8N01_07745) pgsA 1132905..1133489 (+) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J8N01_RS07835 (J8N01_07750) cinA 1133506..1134747 (+) 1242 WP_053487691.1 competence/damage-inducible protein A Machinery gene
  J8N01_RS07840 (J8N01_07755) recA 1134947..1135984 (+) 1038 WP_013058804.1 recombinase RecA Machinery gene
  J8N01_RS07845 (J8N01_07760) rny 1136265..1137824 (+) 1560 WP_013058803.1 ribonuclease Y -
  J8N01_RS07850 (J8N01_07765) - 1137906..1138703 (+) 798 WP_013058802.1 TIGR00282 family metallophosphoesterase -
  J8N01_RS07855 (J8N01_07770) spoVS 1138927..1139187 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44913.02 Da        Isoelectric Point: 4.9898

>NTDB_id=558907 J8N01_RS07835 WP_053487691.1 1133506..1134747(+) (cinA) [Priestia megaterium strain HT517]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHANAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=558907 J8N01_RS07835 WP_053487691.1 1133506..1134747(+) (cinA) [Priestia megaterium strain HT517]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTGTCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGCTATTTCCCGGGCCACCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGTGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTAATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGGCCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.268

99.274

0.588
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

44.878

99.274

0.446
  cinA Streptococcus suis isolate S10

39.418

91.525

0.361