Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   KCL43_RS04195 Genome accession   NZ_CP073275
Coordinates   874905..875783 (+) Length   292 a.a.
NCBI ID   WP_165623370.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain IN-6992     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 869905..880783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCL43_RS04165 (KCL43_04165) - 870098..870973 (+) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -
  KCL43_RS04170 (KCL43_04170) atpD 871141..872547 (+) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  KCL43_RS04175 (KCL43_04175) - 872560..872976 (+) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  KCL43_RS04180 (KCL43_04180) - 873110..873346 (+) 237 WP_012678109.1 DUF1146 family protein -
  KCL43_RS04185 (KCL43_04185) murA 873410..874681 (+) 1272 WP_043052969.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KCL43_RS04190 (KCL43_04190) - 874685..874873 (+) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  KCL43_RS04195 (KCL43_04195) endA 874905..875783 (+) 879 WP_165623370.1 DNA/RNA non-specific endonuclease Machinery gene
  KCL43_RS04200 (KCL43_04200) pheS 876658..877701 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  KCL43_RS04205 (KCL43_04205) pheT 877891..880296 (+) 2406 WP_165623371.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32000.12 Da        Isoelectric Point: 10.2449

>NTDB_id=558775 KCL43_RS04195 WP_165623370.1 874905..875783(+) (endA) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRILGSDTQQAWLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRRALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVAPSQH

Nucleotide


Download         Length: 879 bp        

>NTDB_id=558775 KCL43_RS04195 WP_165623370.1 874905..875783(+) (endA) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAACCCGATCAAGCAGGTCTACCAAAGGATTCTTGGCTCTGACACGCAGCAAGCCT
GGCTACCAAAGGCAAGCAGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGTACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCCAGTCTCCCCTACGCCAATAATAAAACAAAGCTGGTACAAGGGCAAAGTGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGAAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTACAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCCAGCAATATTGCTACTCAAACCGCATGGGCTAACCAAGCAGCCAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAGAGCTCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCCCCTTCACAGCATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(116-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.257

77.397

0.521
  endA Streptococcus pneumoniae D39

67.257

77.397

0.521
  endA Streptococcus pneumoniae R6

67.257

77.397

0.521
  endA Streptococcus pneumoniae TIGR4

67.257

77.397

0.521