Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KC397_RS14350 Genome accession   NZ_CP073273
Coordinates   3044237..3044872 (+) Length   211 a.a.
NCBI ID   WP_346268180.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3039237..3049872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS14330 (KC397_14330) - 3039606..3040268 (+) 663 WP_212570897.1 hypothetical protein -
  KC397_RS14335 (KC397_14335) - 3040324..3042633 (+) 2310 WP_212570899.1 Tex family protein -
  KC397_RS14340 (KC397_14340) - 3042715..3043185 (-) 471 WP_020329343.1 hypothetical protein -
  KC397_RS14345 (KC397_14345) bioH 3043314..3044084 (-) 771 WP_158151885.1 pimeloyl-ACP methyl ester esterase BioH -
  KC397_RS14350 (KC397_14350) comF 3044237..3044872 (+) 636 WP_346268180.1 phosphoribosyltransferase family protein Machinery gene
  KC397_RS14355 (KC397_14355) nfuA 3044973..3045560 (+) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  KC397_RS14360 (KC397_14360) nudE 3045706..3046254 (+) 549 WP_020429366.1 ADP compounds hydrolase NudE -
  KC397_RS14365 (KC397_14365) cysQ 3046278..3047105 (+) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  KC397_RS14370 (KC397_14370) - 3047135..3047893 (-) 759 WP_212570904.1 type II secretion system protein N -
  KC397_RS14375 (KC397_14375) - 3047893..3048399 (-) 507 WP_020329336.1 type II secretion system protein M -
  KC397_RS14380 (KC397_14380) gspL 3048409..3049620 (-) 1212 WP_158147951.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23709.19 Da        Isoelectric Point: 8.5008

>NTDB_id=558738 KC397_RS14350 WP_346268180.1 3044237..3044872(+) (comF) [Vibrio fluvialis strain 19-VB00936]
MPLESHSTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDYHFPLSQSVHQLKYQRQFWQAQP
LAGLLAPRIVSPAPLVACVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRLATPPQQGLNKAQRRRNLNQAFV
LNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 636 bp        

>NTDB_id=558738 KC397_RS14350 WP_346268180.1 3044237..3044872(+) (comF) [Vibrio fluvialis strain 19-VB00936]
TTGCCCCTTGAATCGCATAGCACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGCTGCGCTCG
CTGCGGCCTGCCTTGTGAAACCGCTACCGAGCAGTGTGGCCAATGCCTGACATCGCCGCCGCCGTGGCACAAGCTCTATT
GTTTGGGCGATTACCATTTTCCACTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCG
CTGGCCGGATTGTTAGCACCACGAATAGTATCACCCGCCCCACTGGTAGCCTGCGTGCCGCTGCACTGGCGCCGCCATGC
CTGGCGCGGTTTCAACCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGT
TTTCCCGTCGCCTGGCTACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGCCGGCGGAATCTCAACCAAGCTTTTGTC
TTAAACAGTGCGCCGAGCCACAGACATATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATG
CAATTTACTGCTTGATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

65.403

100

0.654
  comF Vibrio campbellii strain DS40M4

52.709

96.209

0.507