Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   KCX77_RS13690 Genome accession   NZ_CP073265
Coordinates   2735550..2737910 (-) Length   786 a.a.
NCBI ID   WP_212063651.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2730550..2742910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS13670 (KCX77_13670) - 2730608..2732170 (+) 1563 WP_212063650.1 SH3 domain-containing protein -
  KCX77_RS13675 (KCX77_13675) dtd 2732203..2732646 (-) 444 WP_010789335.1 D-aminoacyl-tRNA deacylase -
  KCX77_RS13680 (KCX77_13680) relA 2732659..2734863 (-) 2205 WP_003325298.1 GTP diphosphokinase -
  KCX77_RS13685 (KCX77_13685) - 2735032..2735544 (-) 513 WP_003325297.1 adenine phosphoribosyltransferase -
  KCX77_RS13690 (KCX77_13690) recJ 2735550..2737910 (-) 2361 WP_212063651.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  KCX77_RS13695 (KCX77_13695) - 2737978..2738316 (-) 339 WP_010789338.1 lipopolysaccharide assembly LapA domain-containing protein -
  KCX77_RS13700 (KCX77_13700) - 2738393..2738890 (-) 498 WP_003325293.1 cation:proton antiporter regulatory subunit -
  KCX77_RS13705 (KCX77_13705) secDF 2739088..2741307 (-) 2220 WP_212063652.1 protein translocase subunit SecDF -
  KCX77_RS13710 (KCX77_13710) - 2741346..2741642 (-) 297 WP_003325291.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88166.81 Da        Isoelectric Point: 4.8692

>NTDB_id=558649 KCX77_RS13690 WP_212063651.1 2735550..2737910(-) (recJ) [Bacillus atrophaeus strain CNY01]
MLASKMRWEIQRPDQDKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLNTKEADFYDPFEMKGMKEAVERIKEAISQQ
EPIMIYGDYDADGVTSTSIMLKTLQKLSAHVDFYIPDRFKEGYGPNEQAFRSIKEQGFSLIITVDTGIAAVHEAEAAKEL
GLDVIITDHHEPGPVLPDVCAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGALPEDLLDLAAIGTIADLVPLHDENRLL
ATLGMQKLRMTNRPGLKALIKLSGGDIGQANEETIGFQLAPRLNAVGRIEQADPAVHLLMTEDEFEADELATEIDQLNKE
RQKIVSKMTDEAIEMVEQQGLNGSAIVVAKPGWNPGVVGIVASKLVDRFYRPAVVLGIDEEKGIAKGSARSIKGFDLFKS
LSSCRDILPHFGGHPMAAGMTLSADDVSDLRDRLNQIADETLTEEDFIPVQEIDLVCSVEDITVESISEINLLSPFGMQN
PKPHVMVENALLEDVRRIGANKNHIKMTVKDQSAKLDCVGFHKGELETGIVPGSRISLVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEETLVALPSEKRVIVCFKEETKQLLQNEELRHQLHAVSSEQEARDLELDGAYVVFLDAPPSLDL
LSSLVEGKRPERVYFIFMNNEEHFLSAFPTRDYFKWYYGFLLKRGTFDLKTHGSELAKHKGWTKDTINFMTKVFFDLGFV
RIENGVLSVIYDVKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMNQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=558649 KCX77_RS13690 WP_212063651.1 2735550..2737910(-) (recJ) [Bacillus atrophaeus strain CNY01]
ATGTTAGCGTCAAAAATGCGTTGGGAAATACAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCTCTGCTTGTTAAAAGAGGATTTGATACAGCGGAAAGCGCGAGGCTGTTTTTAAATACAAAAG
AAGCTGATTTTTATGATCCCTTTGAAATGAAGGGCATGAAAGAAGCAGTTGAGCGGATTAAAGAGGCCATTTCACAGCAA
GAGCCCATTATGATATACGGAGATTATGATGCGGACGGCGTCACCAGTACGTCCATCATGCTGAAAACATTACAAAAGCT
CTCGGCTCACGTTGACTTTTACATACCTGACCGGTTTAAAGAGGGCTACGGACCGAATGAGCAAGCCTTCCGCTCGATTA
AAGAGCAAGGCTTCTCCCTTATTATCACGGTTGATACGGGGATTGCGGCTGTTCATGAAGCAGAGGCAGCGAAGGAACTA
GGACTGGATGTCATCATCACTGACCACCATGAGCCCGGCCCTGTGCTGCCTGATGTGTGTGCCATTGTTCACCCGAAGCA
GCCGGGATGCACCTATCCGTTTAAGGAGCTTGCCGGAGTGGGTGTGGCGTTTAAGCTTGCACATGCTCTTTTAGGCGCTT
TGCCTGAGGACCTGCTCGATTTGGCGGCAATCGGAACTATAGCCGATCTTGTGCCGCTGCATGATGAAAACAGATTATTA
GCAACGTTAGGCATGCAGAAGCTTCGAATGACAAACCGGCCGGGGCTAAAAGCATTGATTAAACTGTCAGGCGGTGACAT
CGGACAAGCGAATGAAGAAACAATCGGCTTTCAGCTTGCACCGAGGCTTAATGCTGTCGGGAGAATTGAACAGGCTGATC
CGGCTGTCCATCTGCTGATGACAGAGGATGAGTTCGAAGCAGATGAGCTTGCAACTGAAATCGACCAGCTCAACAAAGAG
CGCCAAAAGATTGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAGCAGCAAGGGCTCAATGGATCTGCCATCGT
AGTGGCAAAGCCCGGCTGGAACCCCGGGGTTGTCGGCATTGTGGCTTCAAAGCTTGTTGACCGTTTTTACCGTCCGGCCG
TTGTTCTTGGAATTGATGAAGAAAAGGGCATCGCGAAAGGATCGGCTCGAAGCATTAAAGGCTTTGATTTATTTAAAAGC
CTTTCTTCTTGCAGAGACATCCTTCCCCATTTCGGAGGACATCCGATGGCTGCAGGAATGACACTTTCTGCCGATGATGT
ATCTGACTTGAGGGACAGGCTCAATCAAATCGCGGATGAGACGCTTACAGAAGAAGATTTTATTCCAGTTCAGGAAATTG
ATCTCGTATGCAGCGTAGAGGATATTACGGTTGAAAGCATTTCTGAAATCAATCTCCTGTCTCCCTTTGGCATGCAGAAT
CCGAAACCGCATGTGATGGTGGAAAATGCGCTTTTGGAAGACGTCCGGAGAATCGGAGCCAATAAAAACCATATCAAAAT
GACGGTCAAAGACCAATCGGCAAAGCTTGATTGTGTCGGCTTTCATAAGGGGGAGCTTGAGACAGGTATTGTGCCAGGTT
CAAGAATCTCATTAGTCGGCGAAATGTCGATTAACGAATGGAATAACAGAAAAAAACCCCAGTTAATGATAAAGGATGCA
GCCGTTTCTGAATGGCAGCTGTTTGACTTGCGTGGAAAACGTACGTGGGAAGAGACATTAGTTGCGCTTCCGTCTGAAAA
ACGGGTCATTGTTTGCTTTAAGGAGGAAACAAAACAGCTGCTTCAAAACGAAGAGCTGCGCCATCAGCTGCACGCGGTGA
GCTCGGAGCAGGAAGCGAGAGATCTTGAACTGGACGGCGCATATGTGGTATTCCTTGATGCGCCTCCTTCATTAGATCTG
CTTTCAAGCTTGGTAGAAGGAAAGAGACCCGAGCGTGTCTATTTTATCTTTATGAATAACGAGGAGCATTTTCTGTCAGC
ATTTCCGACCCGGGATTATTTTAAATGGTACTACGGTTTCTTGCTGAAAAGAGGAACTTTCGATCTGAAAACACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGACAAAAGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AGAATAGAGAATGGCGTGCTGTCTGTTATTTATGATGTGAAAAAACGCGATTTGACAGACTCACAAACCTATCAGGCAAA
ACAGCAGCTGATGGAACTGGATCAGAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTAATGA
ATCAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

84.606

100

0.846