Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KCX77_RS09130 Genome accession   NZ_CP073265
Coordinates   1771346..1772245 (+) Length   299 a.a.
NCBI ID   WP_010788599.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1766346..1777245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS09110 (KCX77_09110) - 1766996..1768744 (+) 1749 WP_063637669.1 hypothetical protein -
  KCX77_RS09115 (KCX77_09115) - 1768741..1769022 (+) 282 WP_010788597.1 FlhB-like flagellar biosynthesis protein -
  KCX77_RS09120 (KCX77_09120) sucC 1769196..1770353 (+) 1158 WP_063637670.1 ADP-forming succinate--CoA ligase subunit beta -
  KCX77_RS09125 (KCX77_09125) sucD 1770382..1771284 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  KCX77_RS09130 (KCX77_09130) dprA 1771346..1772245 (+) 900 WP_010788599.1 DNA-processing protein DprA Machinery gene
  KCX77_RS09135 (KCX77_09135) topA 1772434..1774509 (+) 2076 WP_010788600.1 type I DNA topoisomerase -
  KCX77_RS09140 (KCX77_09140) trmFO 1774585..1775892 (+) 1308 WP_212064566.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KCX77_RS09145 (KCX77_09145) xerC 1775959..1776873 (+) 915 WP_010788602.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33219.31 Da        Isoelectric Point: 9.5634

>NTDB_id=558628 KCX77_RS09130 WP_010788599.1 1771346..1772245(+) (dprA) [Bacillus atrophaeus strain CNY01]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDLHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPTWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=558628 KCX77_RS09130 WP_010788599.1 1771346..1772245(+) (dprA) [Bacillus atrophaeus strain CNY01]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCTGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCGC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATATCCGACATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTTACAAAAGAGCTTGCAGGCAACCAGTGGATCATTGTAAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCTGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

73.579

100

0.736