Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GHH_RS13070 Genome accession   NC_020210
Coordinates   2643512..2645878 (-) Length   788 a.a.
NCBI ID   WP_015375482.1    Uniprot ID   L8A289
Organism   Geobacillus sp. GHH01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2638512..2650878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHH_RS13045 (GHH_c26500) ahpC 2639110..2639673 (-) 564 WP_011232052.1 alkyl hydroperoxide reductase subunit C -
  GHH_RS19215 (GHH_c26510) - 2639926..2640099 (-) 174 WP_015375481.1 hypothetical protein -
  GHH_RS13055 (GHH_c26520) dtd 2640180..2640638 (-) 459 WP_013144643.1 D-aminoacyl-tRNA deacylase -
  GHH_RS13060 (GHH_c26530) - 2640662..2642860 (-) 2199 WP_013144642.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  GHH_RS13065 (GHH_c26540) - 2643009..2643521 (-) 513 WP_013144641.1 adenine phosphoribosyltransferase -
  GHH_RS13070 (GHH_c26550) recJ 2643512..2645878 (-) 2367 WP_015375482.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GHH_RS13075 (GHH_c26560) - 2645936..2646844 (-) 909 WP_013144639.1 cation diffusion facilitator family transporter -
  GHH_RS13080 (GHH_c26570) secDF 2646982..2649234 (-) 2253 WP_015375483.1 protein translocase subunit SecDF -
  GHH_RS13085 (GHH_c26580) - 2649348..2649635 (-) 288 WP_013144637.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 86811.20 Da        Isoelectric Point: 5.8983

>NTDB_id=55842 GHH_RS13070 WP_015375482.1 2643512..2645878(-) (recJ) [Geobacillus sp. GHH01]
MLKAKTRWEVERLDEQTVRRLAEEAGVTPLLARLLVRRGVRTASEAAAFLNPLRQPFHDPFLLDGMERAIQRLKRAIDAG
ERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEW
GMDVIVTDHHEPGPVLPEAHAIIHPKQPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLF
VAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGADPAVALLMTDDENEAVQLAAEMDELNRE
RQQLVAQIAEEAADMVRRQFPPEEHRVLVVAGEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDLF
ASLSQCRDLLPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLDAARGLERFAPFGV
GNPRPLVLIEGASVETMRRVGANGAHMKAVFSQDGAAIDAIGFGLGPLCEEIAPDARISAVGELSVNEWNGFAKPQLSLC
DLAVSDCQLFDVRGCRDVRPLLERLPKEKRLVVSFRCETGQRPDVAPFRGELHCVPTEEEAGALSIDDRYVVLLDVPPRL
ALLSALLGSGRPARIYAVFAQPEAQFFRTFPTREHFKWFYAFLHQHRSFPLAKRGGELARARGWTEETVHFMAKVFLELD
FISEQNGVISLVHQPAKRDLHESPTYRRRRDELEAEHQLVYSTYEQLKRCLAEMTRSQTHEEANVSWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=55842 GHH_RS13070 WP_015375482.1 2643512..2645878(-) (recJ) [Geobacillus sp. GHH01]
ATGTTGAAAGCGAAAACGCGTTGGGAGGTGGAGCGCCTCGATGAGCAGACGGTGAGGCGGCTGGCTGAGGAAGCCGGCGT
CACGCCCTTATTGGCGAGGCTTCTCGTCCGCCGCGGGGTGCGGACGGCCTCGGAGGCGGCGGCGTTCCTCAATCCGCTTC
GCCAACCGTTTCATGATCCGTTTTTGCTTGACGGGATGGAGCGAGCGATTCAGCGTCTAAAGCGGGCGATTGACGCGGGC
GAACGCGTGTTGGTATACGGCGATTACGATGCCGATGGCGTTTGCAGCACGTCGGTGATGGTGAGTGCTCTCAAGGAGGC
GGGGGCGTCGGTCGAGTTCTACATTCCGAACCGATTTACGGAAGGATACGGGCCGAACATGGCGGCGTTTCGCTCCGCAA
AAGAGCGCGGCGTTTCCGTCATTGTGACCGTCGACAATGGGATTGCGGCGGTCAAGGAAATTGCGGCCGCCAACGAGTGG
GGGATGGATGTCATCGTAACGGATCACCACGAGCCAGGTCCGGTGTTGCCGGAGGCGCATGCGATCATTCATCCGAAGCA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTTGCGTTTAAGGTAGCCCATGCCTTGCTTGGGCGGG
TGCCGCGCCATTTGCTTGATTTGGTCGCGATCGGCACGATCGCTGATTTGGTTCCGCTTGTTGGGGAAAACCGCCTCTTT
GTTGCACACGGGCTTGAAGCGTTGCGAGCGACGGAGCGCATCGGGCTGCGCGCTCTTTTTCGGCAATGCCGCATTGATGC
GGCGGCCATCAACGAACAGACGGTCGGATTTGTCATCGCTCCGCGCTTGAACGCGGCGGGGCGCCTCGGCGGCGCCGATC
CGGCAGTGGCGCTCTTAATGACGGACGATGAGAACGAAGCGGTGCAGCTGGCGGCGGAGATGGACGAGTTAAACCGCGAA
CGTCAGCAGCTTGTGGCACAAATCGCTGAAGAAGCGGCGGACATGGTGCGCCGCCAATTTCCTCCTGAGGAACATCGCGT
CTTGGTTGTGGCAGGCGAAGGATGGAATGCCGGAGTGGTGGGCATTGTCGCTTCTAAGCTTGTCGAGCAGTTTTACCGCC
CGGCGGTCGTGCTTTCCATCGACCGGGAAAAAGGGATCGCCAAAGGGTCAGCCCGCAGCATTCATGGGTTTGACTTATTC
GCCAGCCTGTCGCAATGCCGCGACCTGTTGCCGCACTTTGGCGGCCACCCGATGGCGGCGGGGATGACATTGGCGCTTGA
TGATGTCGAAGAATTGCGGCAACGGCTGAACGCCATCGCCGCCGAAACGTTGTCTGAGGACGATTTTACGCCGCCGACGT
TCATCGATGCTTCCTGTTCGATTGCTGAGTTGACGCTCGACGCCGCCCGCGGTCTTGAGCGGTTCGCTCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTGTTCTCATTGAAGGGGCGTCCGTTGAAACGATGCGGCGCGTCGGGGCGAACGGAGCCCATAT
GAAAGCCGTCTTTTCCCAAGACGGGGCCGCGATCGATGCCATCGGCTTCGGCCTCGGGCCGTTATGCGAAGAAATCGCTC
CGGATGCGCGCATTTCGGCGGTCGGGGAGCTGTCGGTGAACGAATGGAACGGGTTCGCCAAGCCGCAGCTGTCGTTGTGT
GATCTGGCGGTCAGCGACTGCCAGCTGTTTGACGTCCGCGGCTGCCGCGACGTCCGTCCACTTCTTGAGCGGCTGCCAAA
AGAGAAGCGGCTAGTCGTCTCCTTTCGCTGCGAAACTGGGCAGCGCCCCGACGTGGCGCCATTTCGCGGGGAGCTTCATT
GCGTGCCGACCGAAGAAGAGGCGGGCGCCTTATCGATTGACGACCGCTATGTCGTGCTGCTTGACGTGCCGCCGCGGCTG
GCCTTGCTGTCGGCGCTTCTTGGCAGCGGGCGGCCGGCGCGCATTTACGCGGTGTTCGCCCAGCCCGAGGCGCAATTTTT
CCGCACGTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCCTTTTTGCATCAACACCGTTCGTTTCCGCTCGCCAAGC
GCGGCGGTGAGCTGGCCCGCGCCCGCGGTTGGACGGAAGAGACGGTTCATTTTATGGCGAAAGTATTTTTAGAGCTTGAC
TTTATCAGCGAACAAAACGGCGTCATTTCGCTCGTTCATCAGCCGGCGAAGCGCGATTTGCACGAATCGCCGACGTACCG
CCGGCGGCGGGACGAGCTCGAGGCGGAGCATCAGTTAGTCTATTCCACTTACGAGCAATTGAAACGCTGTTTGGCGGAAA
TGACACGTTCGCAAACGCACGAGGAGGCAAACGTATCATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L8A289

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.888

98.858

0.523

Multiple sequence alignment