Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   D1J36_RS06295 Genome accession   NZ_CP073239
Coordinates   1365622..1366275 (+) Length   217 a.a.
NCBI ID   WP_154137657.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0416     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360622..1371275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J36_RS06275 (D1J36_006270) - 1360751..1364122 (+) 3372 WP_154137654.1 methylmalonyl-CoA mutase family protein -
  D1J36_RS06280 (D1J36_006275) - 1364138..1364791 (+) 654 WP_154137655.1 HD domain-containing protein -
  D1J36_RS06285 (D1J36_006280) - 1364938..1365396 (+) 459 WP_252339348.1 hypothetical protein -
  D1J36_RS06295 (D1J36_006290) comF 1365622..1366275 (+) 654 WP_154137657.1 phosphoribosyltransferase family protein Machinery gene
  D1J36_RS06300 (D1J36_006295) - 1366585..1367559 (+) 975 WP_153929509.1 ribonucleotide-diphosphate reductase subunit beta -
  D1J36_RS06305 (D1J36_006300) - 1367610..1369265 (+) 1656 WP_154137658.1 ribonucleoside-diphosphate reductase subunit alpha -
  D1J36_RS06310 (D1J36_006305) - 1369376..1370458 (+) 1083 WP_004918073.1 serine hydrolase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25083.27 Da        Isoelectric Point: 9.5936

>NTDB_id=558377 D1J36_RS06295 WP_154137657.1 1365622..1366275(+) (comF) [Riemerella anatipestifer strain RCAD0416]
MFLDFFLPNRCLKCNLIIPSEEIVCWACKSHLNFTHDDFGGKAGFYQKVILKFPVTKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENIDLSGQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQGIPYSHYLLKRNFYSKPQALKQKL
DREKVQNIFSVDEKMEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDK

Nucleotide


Download         Length: 654 bp        

>NTDB_id=558377 D1J36_RS06295 WP_154137657.1 1365622..1366275(+) (comF) [Riemerella anatipestifer strain RCAD0416]
ATGTTTTTAGATTTTTTTCTACCCAATAGATGTCTAAAGTGTAATCTTATTATTCCTTCTGAGGAAATTGTTTGCTGGGC
ATGTAAGTCTCATCTTAATTTTACTCATGATGATTTTGGAGGAAAGGCGGGATTTTATCAAAAAGTTATTCTTAAGTTTC
CTGTAACTAAGGCTTTTAGTTTGATGAAGTATGAGAAAAAAGAGCTTTCTCAAGACATTATACATGCTTTAAAGTACCAT
TCTATGGAACGAGTGGGTAAGGTGCTAGCTCATTGGGTTTCTGAAAATATAGATTTATCTGGTCAAGGGATAGATATACT
AACCAACATTCCACTTCATCCTAAAAAACAGAGAGAAAGAGGTTATAACCAGCTGCATTTGTTTACAAAAACATTATCTC
AGTTACAGGGGATACCATACTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGGTGCAAAATATATTTTCTGTAGATGAGAAAATGGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTAG
CAATAGATAAGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

93.088

100

0.931