Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   D1J36_RS02910 Genome accession   NZ_CP073239
Coordinates   632497..634269 (-) Length   590 a.a.
NCBI ID   WP_252339422.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0416     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627497..639269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J36_RS02890 (D1J36_002885) dinB 627668..628750 (-) 1083 WP_252339421.1 DNA polymerase IV -
  D1J36_RS02895 (D1J36_002890) - 628834..629604 (-) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  D1J36_RS02900 (D1J36_002895) - 629628..631640 (-) 2013 WP_014938048.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  D1J36_RS02905 (D1J36_002900) - 631705..632373 (-) 669 WP_013446918.1 succinate dehydrogenase cytochrome b subunit -
  D1J36_RS02910 (D1J36_002905) comEC 632497..634269 (-) 1773 WP_252339422.1 ComEC/Rec2 family competence protein Machinery gene
  D1J36_RS02915 (D1J36_002910) - 634358..634795 (-) 438 WP_154137826.1 hypothetical protein -
  D1J36_RS02920 (D1J36_002915) - 634795..636423 (-) 1629 WP_014938044.1 carboxyl transferase domain-containing protein -
  D1J36_RS02925 (D1J36_002920) - 636530..637723 (-) 1194 WP_154137824.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68712.10 Da        Isoelectric Point: 9.9359

>NTDB_id=558366 D1J36_RS02910 WP_252339422.1 632497..634269(-) (comEC) [Riemerella anatipestifer strain RCAD0416]
MKKQILFSLFISFSLGVFLQDLNGFSWQQLDLIATLGIISLGLIWVKADWLVWGRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKVEQKLNSTAKNKRYEITAFHQNQPFKAVLSVPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKYQ
ARKGVYYRAYAKDLHKAPKSELTFSEKMKQWRLELLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAETNTNFRRSGLTHV
LAISGSHIAIIFGVIYMLLSLIVPAKFRTGVILFSLILIWVFAWFIGWGSSVVRSCIMLTVYFGFVLLQRKPQVLDALAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNKPIIRLFPNPKNKIQKLLLYTFTVSTAAQLGTLPIVIYYFHQYSAWSV
LANLVVLPLMEIVMILSFLMTIVFGLGIYWGWLSFAYDWLIKALLWLIGFFGKIELGYFQDIPLSIWEMGALAVGLYFLR
EILVRFRWRGFMKLMFSVLLFFGIKMGLDVRAYHDKEARWHYHYHTKVFSVLDKGKVYFWVSDKDNLEMLESYLIKPYVI
SKRAESYKVKKMMSEEVNEVIFNGKRYPSQ

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=558366 D1J36_RS02910 WP_252339422.1 632497..634269(-) (comEC) [Riemerella anatipestifer strain RCAD0416]
GTGAAAAAGCAGATTCTTTTTAGCCTCTTTATAAGTTTTTCATTAGGTGTCTTCTTGCAAGACCTTAATGGGTTCTCGTG
GCAACAGCTCGATCTTATAGCTACATTAGGAATTATTAGCCTTGGATTGATTTGGGTAAAAGCAGATTGGTTAGTTTGGG
GTAGAATTTGGTTGCTCAATATCTTTTTTCTCTGTTTTGGAGTATTTACTCATTACCTTAATTCGGAAAAGTCAGTTCTA
CCAAGTGTTTCTAAAAAGGAAGAACTTGTTTTTAAAGTTGAACAAAAGCTGAATTCAACGGCTAAAAATAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCTTTCAAAGCGGTTTTATCTGTTCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTATTATCAATCTCAACTTAGTTTATATCCGTTAGAGTCTTCTAAGAATAATTATCAGTTTGATTATGCTAAATATCAA
GCAAGGAAAGGTGTTTATTACAGGGCTTATGCTAAGGATTTACACAAAGCACCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACAATGGCGACTGGAACTCCTTAGTAATATAGATAAAAACGAAAAACTTTCACAACAAACTAGAGCTTTCCTAA
AAGGAATTGTTTTAGCTGATAGAACAGAGGTAGATGCGGAAACTAATACCAATTTTAGGAGAAGTGGTTTGACGCATGTT
TTAGCCATTTCTGGGTCGCATATTGCAATTATCTTTGGGGTGATTTATATGCTACTGAGTTTAATTGTGCCAGCAAAATT
TAGGACAGGCGTAATATTGTTTAGCTTAATATTAATTTGGGTTTTTGCTTGGTTTATCGGTTGGGGGAGTTCTGTTGTTA
GGTCTTGTATTATGCTCACCGTTTATTTTGGTTTTGTGCTTCTACAAAGAAAACCTCAAGTTTTGGACGCTTTAGCCTTA
GCAGGGCTGGGTATTCTGATGGTAGATACACAAGAACTGTTTTCAGTAGGGTTTCAGTTGAGTTTTTCTGCGGTGTTGGG
GATTTATTGGTTTAATAAACCTATCATTCGTCTTTTTCCAAATCCTAAAAACAAAATTCAAAAACTATTACTTTATACTT
TTACTGTGTCCACGGCGGCACAACTTGGGACGCTACCTATTGTGATTTACTATTTTCATCAGTATTCGGCGTGGTCTGTT
TTGGCTAATCTTGTAGTACTTCCTTTGATGGAAATTGTGATGATACTATCATTTTTAATGACAATTGTTTTTGGTTTAGG
AATTTATTGGGGGTGGCTATCTTTTGCTTATGATTGGCTAATTAAAGCCTTGCTATGGCTGATAGGCTTCTTTGGTAAAA
TAGAGTTAGGGTATTTTCAAGATATACCGTTGAGTATTTGGGAGATGGGAGCTTTGGCGGTAGGACTTTATTTTCTAAGA
GAAATATTGGTTCGGTTTAGATGGAGAGGTTTTATGAAGTTGATGTTTTCTGTACTTTTATTTTTCGGGATTAAAATGGG
GCTAGATGTTAGAGCTTATCATGATAAAGAAGCGAGGTGGCATTATCATTATCACACTAAGGTGTTTTCTGTTTTGGATA
AAGGAAAAGTGTATTTTTGGGTGTCAGATAAAGACAATTTAGAGATGTTAGAAAGTTATCTCATAAAGCCTTATGTGATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAAAAGATGATGTCTGAAGAAGTAAATGAGGTTATTTTTAATGGAAAAAGATA
TCCGTCTCAATAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-173)

Competence protein (Competence)

(216-479)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

89.492

100

0.895