Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XCM_RS20125 Genome accession   NZ_CP073209
Coordinates   4641469..4642989 (+) Length   506 a.a.
NCBI ID   WP_033482589.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain GXG07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4636469..4647989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCM_RS20105 (XCM_19935) - 4637315..4637971 (+) 657 WP_003486484.1 RIO1 family regulatory kinase/ATPase -
  XCM_RS20110 (XCM_19940) - 4638175..4640160 (-) 1986 WP_003486486.1 beta-N-acetylglucosaminidase domain-containing protein -
  XCM_RS20115 (XCM_19945) - 4640643..4641017 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  XCM_RS20120 (XCM_19950) - 4641172..4641453 (+) 282 WP_003486493.1 accessory factor UbiK family protein -
  XCM_RS20125 (XCM_19955) comM 4641469..4642989 (+) 1521 WP_033482589.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  XCM_RS20130 (XCM_19960) - 4643344..4643853 (+) 510 WP_003486500.1 lipocalin family protein -
  XCM_RS20135 (XCM_19965) - 4644093..4644269 (-) 177 WP_003486502.1 hypothetical protein -
  XCM_RS20140 (XCM_19970) - 4644652..4646214 (+) 1563 WP_003486505.1 EAL domain-containing protein -
  XCM_RS20145 (XCM_19975) - 4646280..4647401 (-) 1122 WP_003486507.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53876.59 Da        Isoelectric Point: 8.3425

>NTDB_id=558312 XCM_RS20125 WP_033482589.1 4641469..4642989(+) (comM) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIIPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=558312 XCM_RS20125 WP_033482589.1 4641469..4642989(+) (comM) [Xanthomonas citri pv. mangiferaeindicae strain GXG07]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCGGAAGCGGCAGTGCGCGAATCGCGCGAGCGTGTGCGCGCTGCCCTGC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTACCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGTGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCATCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGACGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAACCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCCGGTTGCGGCAAGACGCTGCTGGCTTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTCGAAACCGCTGCAATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGACAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAATGGCAACGGCAAACCCTGGAAGTCTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGCGGCGCGCTGCCCAA
CGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

100

0.561
  comM Haemophilus influenzae Rd KW20

55.382

100

0.559
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Vibrio campbellii strain DS40M4

53.557

100

0.536
  comM Legionella pneumophila str. Paris

51.71

98.221

0.508
  comM Legionella pneumophila strain ERS1305867

51.71

98.221

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455