Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG51_RS03160 Genome accession   NZ_CP073119
Coordinates   651900..652172 (+) Length   90 a.a.
NCBI ID   WP_254342781.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 643151..659561 651900..652172 within 0


Gene organization within MGE regions


Location: 643151..659561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS03120 (KCG51_03160) thrB 643151..644068 (-) 918 WP_250579088.1 homoserine kinase -
  KCG51_RS03125 (KCG51_03165) - 644229..645235 (+) 1007 Protein_604 IS5 family transposase -
  KCG51_RS03155 (KCG51_03195) comE 651369..651656 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG51_RS03160 comP 651900..652172 (+) 273 WP_254342781.1 type IV pilin protein Machinery gene
  KCG51_RS03165 (KCG51_03205) - 652403..653227 (-) 825 WP_070713410.1 undecaprenyl-diphosphate phosphatase -
  KCG51_RS03170 (KCG51_03210) dsbA1 653272..653913 (-) 642 WP_250579091.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG51_RS03175 (KCG51_03215) - 653925..655040 (-) 1116 WP_250579092.1 SPOR domain-containing protein -
  KCG51_RS03180 (KCG51_03220) - 655195..656690 (-) 1496 Protein_610 YifB family Mg chelatase-like AAA ATPase -
  KCG51_RS03185 (KCG51_03225) - 656704..657024 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  KCG51_RS03190 (KCG51_03230) metK 657134..658303 (-) 1170 WP_254342784.1 methionine adenosyltransferase -
  KCG51_RS03195 (KCG51_03235) - 658835..659032 (+) 198 WP_107858221.1 hypothetical protein -
  KCG51_RS03200 (KCG51_03240) - 659100..659561 (+) 462 WP_254342786.1 hypothetical protein -

Sequence

Protein


Download         Length: 90 a.a.        Molecular weight: 9982.83 Da        Isoelectric Point: 10.8507

>NTDB_id=558153 KCG51_RS03160 WP_254342781.1 651900..652172(+) (comP) [Neisseria subflava strain HP0069]
MVQLLVVMLLVSILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYMKKGSFKLTSTKWPELPVKEAGGFCIRMSGQ
AKGSWRGSLL

Nucleotide


Download         Length: 273 bp        

>NTDB_id=558153 KCG51_RS03160 WP_254342781.1 651900..652172(+) (comP) [Neisseria subflava strain HP0069]
TTGGTACAGCTGTTGGTGGTGATGCTGTTGGTTTCGATATTGGCGACGGCGGCATTTACGGCCTATCGGGAATCGGTCCG
CTCGGCCAACCTGCGTGCGGCGCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACATGAAAAAGGGCA
GCTTTAAGCTGACGTCGACGAAGTGGCCGGAGCTGCCGGTAAAGGAGGCGGGTGGTTTCTGTATCAGGATGAGCGGCCAG
GCTAAGGGATCTTGGAGGGGAAGTTTACTTTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(21-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

89.888

98.889

0.889
  comP Neisseria gonorrhoeae MS11

54.762

93.333

0.511
  comP Neisseria meningitidis 8013

51.111

100

0.511