Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KBU60_RS14715 Genome accession   NZ_CP073068
Coordinates   3148094..3148819 (+) Length   241 a.a.
NCBI ID   WP_020904371.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3143094..3153819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS14700 (KBU60_14700) - 3144199..3146520 (+) 2322 WP_025522200.1 Tex family protein -
  KBU60_RS14705 (KBU60_14705) - 3146654..3147118 (-) 465 WP_005459035.1 hypothetical protein -
  KBU60_RS14710 (KBU60_14710) bioH 3147242..3148009 (-) 768 WP_180793160.1 pimeloyl-ACP methyl ester esterase BioH -
  KBU60_RS14715 (KBU60_14715) comF 3148094..3148819 (+) 726 WP_020904371.1 amidophosphoribosyltransferase Machinery gene
  KBU60_RS14720 (KBU60_14720) nfuA 3148917..3149501 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  KBU60_RS14725 (KBU60_14725) nudE 3149722..3150291 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  KBU60_RS14730 (KBU60_14730) cysQ 3150332..3151159 (+) 828 WP_140287759.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  KBU60_RS14735 (KBU60_14735) - 3151445..3152206 (-) 762 WP_140119051.1 type II secretion system protein N -
  KBU60_RS14740 (KBU60_14740) - 3152208..3152699 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27718.92 Da        Isoelectric Point: 8.9991

>NTDB_id=557669 KBU60_RS14715 WP_020904371.1 3148094..3148819(+) (comF) [Vibrio parahaemolyticus strain FB-11]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=557669 KBU60_RS14715 WP_020904371.1 3148094..3148819(+) (comF) [Vibrio parahaemolyticus strain FB-11]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGCTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGAGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477