Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   J7D36_RS01605 Genome accession   NZ_CP073060
Coordinates   338151..338792 (+) Length   213 a.a.
NCBI ID   WP_021510158.1    Uniprot ID   A0AAV3K4P6
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333151..343792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS01585 (J7D36_01585) - 333199..333531 (+) 333 WP_021510161.1 hypothetical protein -
  J7D36_RS01590 (J7D36_01590) - 333534..334358 (+) 825 WP_021510160.1 putative RNA methyltransferase -
  J7D36_RS01595 (J7D36_01595) ponA 334376..336931 (-) 2556 WP_021510159.1 penicillin-binding protein PBP1a -
  J7D36_RS01600 (J7D36_01600) pilM 337093..338151 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  J7D36_RS01605 (J7D36_01605) pilN 338151..338792 (+) 642 WP_021510158.1 PilN domain-containing protein Machinery gene
  J7D36_RS01610 (J7D36_01610) pilO 338789..339529 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  J7D36_RS01615 (J7D36_01615) pilP 339540..340067 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  J7D36_RS01620 (J7D36_01620) pilQ 340135..342300 (+) 2166 WP_086374082.1 type IV pilus secretin PilQ family protein Machinery gene
  J7D36_RS01625 (J7D36_01625) aroK 342312..342881 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24049.38 Da        Isoelectric Point: 5.3968

>NTDB_id=557492 J7D36_RS01605 WP_021510158.1 338151..338792(+) (pilN) [Acinetobacter baumannii strain DETAB-P39]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKTASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=557492 J7D36_RS01605 WP_021510158.1 338151..338792(+) (pilN) [Acinetobacter baumannii strain DETAB-P39]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTCTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGACTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.381

98.592

0.714