Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KBP46_RS19340 Genome accession   NZ_CP073027
Coordinates   4204722..4205375 (-) Length   217 a.a.
NCBI ID   WP_216443939.1    Uniprot ID   -
Organism   Chryseobacterium sp. PCH239     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4199722..4210375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP46_RS24060 - 4200947..4201081 (+) 135 WP_301285861.1 hypothetical protein -
  KBP46_RS19315 (KBP46_19315) - 4201068..4201247 (+) 180 WP_216443936.1 transposase -
  KBP46_RS19325 (KBP46_19325) der 4201770..4203080 (+) 1311 WP_062676152.1 ribosome biogenesis GTPase Der -
  KBP46_RS19330 (KBP46_19330) upp 4203234..4203884 (+) 651 WP_216443937.1 uracil phosphoribosyltransferase -
  KBP46_RS19335 (KBP46_19335) - 4203886..4204572 (-) 687 WP_216443938.1 alpha/beta fold hydrolase -
  KBP46_RS19340 (KBP46_19340) comF 4204722..4205375 (-) 654 WP_216443939.1 ComF family protein Machinery gene
  KBP46_RS19345 (KBP46_19345) - 4205722..4207200 (-) 1479 WP_216443940.1 helix-turn-helix domain-containing protein -
  KBP46_RS19350 (KBP46_19350) aceB 4207329..4208903 (+) 1575 WP_216443941.1 malate synthase A -
  KBP46_RS19355 (KBP46_19355) aceA 4209015..4210298 (+) 1284 WP_346563532.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25258.03 Da        Isoelectric Point: 6.5661

>NTDB_id=557417 KBP46_RS19340 WP_216443939.1 4204722..4205375(-) (comF) [Chryseobacterium sp. PCH239]
MILDILFPNRCIHCNTIIDPELLVCGLCFSQIHFTHYNYFENNPVKEKCSLFFPVENAFSLIQFEEESLSRQIIHELKYR
SRESIGKILAEWMIDRLDFRDDHPDLLVTVPLHPKKLRERGYNQLHLFTETLSEFYDIPFDHELVKRNHYSKAQALKDKK
HRLKTTNTFSVTQPVSGKHILLIDDVFTTGNTVSSVAWEILNAGDNKVSVLVIAVDI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=557417 KBP46_RS19340 WP_216443939.1 4204722..4205375(-) (comF) [Chryseobacterium sp. PCH239]
ATGATATTAGATATATTGTTTCCCAACCGCTGCATCCACTGCAACACAATCATTGATCCAGAACTATTGGTTTGTGGCCT
TTGTTTCAGCCAGATTCATTTTACCCATTACAATTATTTTGAAAATAATCCAGTCAAGGAAAAATGCAGTTTATTTTTTC
CGGTTGAAAATGCGTTTTCTTTAATTCAGTTTGAAGAGGAAAGTTTAAGCCGGCAGATTATCCATGAACTAAAATACAGA
AGCAGGGAAAGTATAGGAAAGATTCTTGCAGAGTGGATGATAGATCGTTTGGATTTTAGAGATGACCATCCTGATCTTTT
AGTAACTGTACCACTCCATCCAAAGAAATTAAGAGAACGGGGATATAATCAGCTTCATTTATTCACAGAAACATTATCAG
AATTTTATGATATTCCGTTTGATCATGAATTAGTCAAAAGAAATCATTATTCCAAAGCTCAGGCTTTAAAAGACAAAAAA
CACAGGCTGAAGACCACTAATACATTTTCAGTTACCCAACCTGTTTCCGGAAAGCATATCCTCCTGATTGATGATGTTTT
TACTACAGGAAATACTGTTTCATCAGTTGCGTGGGAGATTTTAAATGCTGGTGACAATAAAGTAAGTGTATTGGTGATAG
CTGTGGATATTTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

53.241

99.539

0.53