Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   L1A17_RS06365 Genome accession   NZ_CP090886
Coordinates   1225691..1226413 (+) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP7513     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1220691..1231413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A17_RS06345 (L1A17_06345) - 1220776..1222398 (+) 1623 WP_000017803.1 polysaccharide biosynthesis protein -
  L1A17_RS06350 (L1A17_06350) amiA 1222601..1224559 (+) 1959 WP_000748889.1 peptide ABC transporter substrate-binding protein Regulator
  L1A17_RS06355 (L1A17_06355) - 1224731..1224991 (+) 261 WP_000768979.1 hypothetical protein -
  L1A17_RS06360 (L1A17_06360) - 1224995..1225618 (+) 624 WP_000638446.1 ABC transporter ATP-binding protein -
  L1A17_RS06365 (L1A17_06365) rcrP 1225691..1226413 (+) 723 WP_001010371.1 ATP-binding cassette domain-containing protein Regulator
  L1A17_RS06370 (L1A17_06370) - 1226570..1227664 (+) 1095 WP_000031970.1 cystathionine gamma-synthase -
  L1A17_RS06375 (L1A17_06375) - 1227672..1228838 (+) 1167 WP_000521377.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=556885 L1A17_RS06365 WP_001010371.1 1225691..1226413(+) (rcrP) [Streptococcus pneumoniae strain NP7513]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=556885 L1A17_RS06365 WP_001010371.1 1225691..1226413(+) (rcrP) [Streptococcus pneumoniae strain NP7513]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363