Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   L1A16_RS08195 Genome accession   NZ_CP090885
Coordinates   1616504..1617775 (+) Length   423 a.a.
NCBI ID   WP_001113196.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ND6401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1611504..1622775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS08160 (L1A16_08160) - 1612569..1612997 (-) 429 WP_000418176.1 NUDIX hydrolase -
  L1A16_RS08165 (L1A16_08165) - 1612963..1614066 (-) 1104 WP_000719717.1 site-2 protease family protein -
  L1A16_RS08170 (L1A16_08170) - 1614085..1614555 (-) 471 WP_000257106.1 DUF3013 family protein -
  L1A16_RS08175 (L1A16_08175) - 1614846..1615298 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  L1A16_RS08180 (L1A16_08180) - 1615335..1615514 (-) 180 WP_001132284.1 type II toxin-antitoxin system HicA family toxin -
  L1A16_RS08185 (L1A16_08185) - 1615651..1615830 (-) 180 WP_001809903.1 hypothetical protein -
  L1A16_RS08190 (L1A16_08190) - 1615995..1616234 (-) 240 WP_000818078.1 hypothetical protein -
  L1A16_RS08195 (L1A16_08195) rarA 1616504..1617775 (+) 1272 WP_001113196.1 replication-associated recombination protein A Machinery gene
  L1A16_RS08205 (L1A16_08205) - 1618320..1619639 (-) 1320 WP_000502545.1 glycoside hydrolase family 32 protein -
  L1A16_RS08210 (L1A16_08210) - 1619649..1621265 (-) 1617 WP_000669747.1 ABC transporter substrate-binding protein -
  L1A16_RS08215 (L1A16_08215) - 1621294..1622184 (-) 891 WP_000797959.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46952.45 Da        Isoelectric Point: 6.0996

>NTDB_id=556754 L1A16_RS08195 WP_001113196.1 1616504..1617775(+) (rarA) [Streptococcus pneumoniae strain ND6401]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFNFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=556754 L1A16_RS08195 WP_001113196.1 1616504..1617775(+) (rarA) [Streptococcus pneumoniae strain ND6401]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAAAGACTC
CAAGAAATCGCCGAAGAGGCTAAATTTTCTGGCGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTAATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGTTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.757

99.054

0.572