Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   J9537_RS14045 Genome accession   NZ_CP072888
Coordinates   2878846..2880612 (-) Length   588 a.a.
NCBI ID   WP_010745128.1    Uniprot ID   R2RRM0
Organism   Enterococcus raffinosus strain F162_2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2873846..2885612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9537_RS14040 (J9537_14040) rcrQ 2877069..2878853 (-) 1785 WP_028020633.1 ABC transporter ATP-binding protein Regulator
  J9537_RS14045 (J9537_14045) rcrP 2878846..2880612 (-) 1767 WP_010745128.1 ABC transporter ATP-binding protein Regulator
  J9537_RS14050 (J9537_14050) - 2880714..2881142 (-) 429 WP_028020634.1 MarR family winged helix-turn-helix transcriptional regulator -
  J9537_RS14055 (J9537_14055) - 2881202..2881537 (-) 336 WP_010745126.1 hypothetical protein -
  J9537_RS14060 (J9537_14060) - 2881682..2883061 (-) 1380 WP_010745125.1 MATE family efflux transporter -
  J9537_RS14065 (J9537_14065) - 2883065..2883499 (-) 435 WP_010745124.1 MarR family transcriptional regulator -
  J9537_RS14070 (J9537_14070) - 2883633..2884232 (-) 600 WP_010745123.1 YitT family protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65057.23 Da        Isoelectric Point: 5.4009

>NTDB_id=556658 J9537_RS14045 WP_010745128.1 2878846..2880612(-) (rcrP) [Enterococcus raffinosus strain F162_2]
MIQLIKRTNAKERLLVLASVLFIVGQVWMDLKVPDYMSQITTLLQTPNTAISEILKPGGWMILLSLMSFVFSSIVGLFAA
KLAASLTCRLRQEMFGQVMDYSTYEIQQFSIPSLTTRTTNDLTQIQQVVAMGLQVMIKGPITAVWAVLKIAGKNWQWTTT
TGVAVLILLIMLSIVLTLVQPRFAKVQQLTDKVNSITRENLTGLRVVRAYNAEDYQEEKFEKANQDLTATNLFAGRVMAL
LSPGMSLISGGLTLAVYWIGAYMIQQAQGGLKLSLFSDMIVFSSYAMQVVMSFVLMSMIFMILPRATVSARRINEVLTKE
SSVEFPTEGEKTQPEIKGTVEFDHVSFSYPDASEPVIHDISFKADQGDTVAFIGSTGSGKSTILNLIPRFYETTEGNISI
DGQPINTYSHVNLNDIVGYIPQKPILFSGTIQSNLDFGTSGNQPLNEEKMQEALSIAQASEFVNEKEGKLKSPVAQNGSN
FSGGQKQRLAIARVIARQPEILLFDDSFSALDYKTDKKLRQVLKEKLADTTKLIVAQRISTIMDADQILVLDEGRIVGQG
THDELLATNSVYQEIAYSQLSKEELVNG

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=556658 J9537_RS14045 WP_010745128.1 2878846..2880612(-) (rcrP) [Enterococcus raffinosus strain F162_2]
ATGATACAACTAATAAAACGAACCAACGCAAAAGAACGATTGCTGGTATTAGCCAGTGTACTATTTATCGTCGGACAAGT
CTGGATGGATTTGAAGGTCCCGGATTATATGTCGCAAATCACCACCTTATTGCAAACGCCTAACACCGCCATCAGTGAAA
TTTTGAAACCGGGCGGCTGGATGATTTTACTTTCTCTAATGAGCTTTGTTTTTTCTTCTATTGTCGGTTTATTCGCCGCG
AAGCTAGCCGCGAGCTTAACTTGCCGCCTACGTCAAGAGATGTTTGGACAAGTAATGGATTATTCCACGTATGAGATTCA
GCAATTCTCGATCCCCAGTTTAACGACTCGGACAACCAATGATTTAACGCAAATTCAACAGGTAGTCGCGATGGGGCTGC
AAGTAATGATCAAAGGACCTATCACGGCGGTCTGGGCGGTATTGAAAATTGCCGGAAAAAATTGGCAGTGGACCACTACG
ACAGGAGTTGCTGTTTTGATCCTATTGATTATGCTATCGATCGTTTTGACACTAGTGCAGCCGCGCTTTGCAAAAGTGCA
GCAATTAACCGATAAAGTTAACAGTATTACACGGGAAAATCTAACGGGTCTGCGAGTGGTCCGAGCATATAACGCAGAAG
ACTATCAAGAAGAGAAATTCGAGAAGGCCAATCAAGATCTCACAGCAACGAATTTATTCGCGGGTCGCGTAATGGCATTG
CTGAGTCCGGGAATGAGCCTGATTTCAGGCGGACTGACACTAGCGGTCTATTGGATCGGTGCTTACATGATTCAACAAGC
GCAAGGGGGACTAAAGCTTTCCTTGTTCAGTGATATGATCGTCTTTTCTTCTTATGCGATGCAGGTAGTAATGAGCTTTG
TTTTAATGTCGATGATTTTTATGATCTTACCTCGAGCGACCGTATCCGCTAGACGGATCAACGAAGTTTTAACGAAAGAA
TCCTCCGTTGAATTTCCAACGGAAGGCGAGAAAACACAACCGGAGATCAAAGGAACCGTAGAATTCGATCATGTATCATT
CAGCTATCCGGATGCTTCTGAACCTGTGATTCATGACATCAGCTTTAAGGCCGATCAGGGGGATACAGTTGCCTTTATCG
GTTCGACCGGCAGCGGAAAAAGTACAATCCTGAATTTGATTCCTCGCTTTTATGAAACAACCGAAGGAAATATTTCAATT
GATGGACAGCCGATCAATACGTATAGTCACGTGAATTTAAATGATATTGTCGGCTACATTCCCCAAAAGCCAATTTTATT
TAGCGGAACGATCCAGTCGAATCTTGATTTTGGAACCAGCGGTAATCAGCCGCTGAATGAAGAAAAAATGCAGGAAGCCT
TGTCCATTGCACAGGCTAGTGAATTTGTGAATGAAAAAGAGGGCAAGCTGAAGAGTCCGGTCGCTCAAAACGGCAGCAAT
TTCTCCGGTGGACAGAAGCAGCGTCTAGCAATTGCTCGTGTGATCGCAAGACAGCCAGAAATTCTATTATTCGATGATTC
CTTTTCTGCGCTAGATTACAAAACGGATAAAAAATTACGACAGGTACTAAAAGAAAAATTAGCTGATACGACAAAACTGA
TTGTTGCTCAACGAATCAGTACGATCATGGATGCGGATCAGATCCTTGTTTTGGATGAAGGACGAATCGTCGGACAAGGA
ACCCACGACGAATTATTGGCGACCAACTCCGTCTATCAAGAGATTGCGTATTCACAGCTGTCGAAGGAGGAATTAGTTAA
TGGATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R2RRM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

60.333

100

0.616