Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   J9537_RS01700 Genome accession   NZ_CP072888
Coordinates   317503..319347 (+) Length   614 a.a.
NCBI ID   WP_218256485.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain F162_2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 312503..324347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9537_RS01685 (J9537_01685) - 312601..314424 (+) 1824 WP_218256483.1 APC family permease -
  J9537_RS01690 (J9537_01690) - 314660..315106 (+) 447 WP_010747153.1 MarR family transcriptional regulator -
  J9537_RS01695 (J9537_01695) - 315106..317487 (+) 2382 WP_218256484.1 ABC transporter ATP-binding protein -
  J9537_RS01700 (J9537_01700) rcrQ 317503..319347 (+) 1845 WP_218256485.1 ABC transporter ATP-binding protein Regulator
  J9537_RS01705 (J9537_01705) - 319397..319990 (-) 594 WP_245001274.1 hypothetical protein -
  J9537_RS01710 (J9537_01710) - 319980..320984 (-) 1005 WP_218256487.1 DUF4947 domain-containing protein -
  J9537_RS01715 (J9537_01715) - 321248..321889 (+) 642 WP_218256488.1 L-fuculose-phosphate aldolase -
  J9537_RS01720 (J9537_01720) - 321924..322964 (+) 1041 WP_218256489.1 2-hydroxyacid dehydrogenase -
  J9537_RS01725 (J9537_01725) - 323007..323996 (-) 990 WP_218256490.1 transketolase C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68036.56 Da        Isoelectric Point: 5.9485

>NTDB_id=556626 J9537_RS01700 WP_218256485.1 317503..319347(+) (rcrQ) [Enterococcus raffinosus strain F162_2]
MAEQKQNRPHGGGPGRGMAAPVEKAKDFKGTIKKLVSYLGAYKIAVFFVMIFAAASTIFNIWGPKILSKAITELFNGLIK
KYQGTGDINFEKIGGILVFMLGLYLVASLFGVIQGWIMSTISQRITYRMRKEISEKINRMPMNYFESRTTGEVLSRITND
VDTLGQSLNQSLTQLITSTFTIVGVIVMMLSISVKMTGIAILIVPISLILILVVVKNSQKYFKTQQEYLGVINGKVEETI
GGYTIVRLFNEEENSLKEFKEQNDVLFKSAWKSQFLSGLMQPIMNFVGNLGYVGVAIAGGVMAYNGSITVGDIQAFIQYV
RNLTQPIAQLAQVSNMLQSMAAAAERVFEFLAEDEEDQLAENPVQIDKAEGMVDFEHVQFGYTPDKIVIQDFTSHVDPGQ
TVAIVGPTGAGKTTMVKLLMRFYDVNSGAIKIDGHNIKDFNRADLRKNIGMVLQDTWLFKGTIMDNLRYGRLDATDEEVY
AAAKAAHVDHFIKTLPGGYNMELNEESSNISQGQKQLLTIARAILADKPILILDEATSSVDTRTEGLIQEAMNNLMKGRT
SFVIAHRLSTIKDADKILYMQGGDIKEQGSHEELLAQNGLYAALYNSQFEELSE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=556626 J9537_RS01700 WP_218256485.1 317503..319347(+) (rcrQ) [Enterococcus raffinosus strain F162_2]
ATGGCAGAACAAAAACAAAATCGCCCTCATGGTGGCGGACCTGGCCGGGGAATGGCTGCGCCAGTAGAAAAAGCCAAAGA
CTTCAAAGGAACAATCAAAAAATTAGTTTCCTATCTTGGCGCATATAAAATCGCAGTTTTTTTTGTAATGATCTTTGCAG
CAGCCTCAACGATTTTTAATATTTGGGGGCCAAAAATCTTATCAAAGGCGATTACAGAATTATTTAATGGCTTGATTAAG
AAGTATCAAGGAACCGGCGATATTAACTTTGAGAAAATTGGTGGGATCTTAGTCTTCATGTTAGGCCTATATCTAGTAGC
TTCCTTATTTGGAGTTATCCAAGGCTGGATCATGTCGACGATCTCGCAAAGAATTACGTATCGGATGCGTAAGGAAATTT
CTGAGAAAATCAATCGCATGCCAATGAATTATTTTGAGAGTCGGACGACAGGAGAAGTTCTTTCCCGTATCACAAACGAT
GTGGACACTTTAGGACAATCCTTGAATCAAAGCTTAACTCAATTGATTACTTCAACCTTTACGATTGTCGGAGTTATCGT
TATGATGCTTTCGATTTCAGTGAAGATGACAGGGATTGCGATCTTAATCGTACCAATTTCTTTAATACTGATCTTAGTTG
TTGTGAAAAACTCACAAAAATACTTCAAAACCCAACAGGAATACCTTGGAGTTATCAATGGGAAGGTAGAAGAAACCATC
GGTGGGTATACAATCGTTCGTTTATTTAATGAAGAAGAAAACTCATTAAAAGAATTTAAAGAGCAAAATGATGTATTGTT
CAAATCAGCTTGGAAATCACAATTTCTTTCTGGTTTGATGCAGCCCATTATGAACTTTGTCGGAAACTTAGGCTATGTCG
GTGTGGCGATCGCTGGTGGGGTTATGGCATACAACGGCTCAATCACAGTCGGAGATATCCAAGCGTTTATCCAATATGTA
CGTAACCTGACACAACCAATTGCTCAGCTTGCGCAAGTATCTAACATGCTTCAATCAATGGCGGCAGCGGCTGAACGCGT
CTTTGAATTCTTAGCAGAAGACGAAGAAGATCAACTGGCTGAAAACCCAGTTCAGATCGACAAAGCAGAAGGCATGGTGG
ACTTTGAACATGTTCAATTCGGTTACACACCGGATAAGATCGTTATCCAAGACTTTACTTCTCATGTTGATCCTGGTCAG
ACAGTCGCAATTGTTGGACCAACTGGCGCTGGTAAAACGACAATGGTTAAGTTGCTGATGCGCTTTTATGATGTAAATTC
TGGTGCAATCAAAATTGATGGTCATAACATCAAGGATTTCAATCGTGCAGATTTACGTAAAAATATCGGGATGGTTTTAC
AAGATACCTGGTTATTTAAAGGCACAATTATGGACAACCTTCGTTACGGTCGTTTAGATGCTACCGATGAAGAAGTTTAC
GCAGCGGCAAAAGCCGCTCACGTGGATCACTTCATCAAGACATTACCTGGCGGCTATAATATGGAGTTAAACGAAGAGTC
TTCCAACATCTCGCAGGGGCAAAAACAATTGTTGACGATTGCTCGCGCGATTTTAGCAGACAAACCCATTCTAATTCTGG
ATGAGGCGACATCCTCTGTTGATACACGGACAGAAGGATTGATCCAAGAGGCTATGAATAACTTAATGAAGGGGCGTACC
TCTTTCGTTATTGCCCATCGTTTGTCAACAATCAAAGATGCGGATAAGATTCTCTATATGCAAGGCGGAGATATTAAGGA
ACAAGGAAGCCACGAAGAATTATTGGCTCAAAACGGGCTTTATGCCGCATTGTATAATTCGCAATTTGAAGAATTATCAG
AATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(46-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.6

94.951

0.48