Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J9319_RS08205 Genome accession   NZ_CP072851
Coordinates   1586300..1587079 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain 6ww6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581300..1592079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS08185 (J9319_08185) trmFO 1582004..1583308 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J9319_RS08190 (J9319_08190) xerC 1583371..1584288 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  J9319_RS08195 (J9319_08195) hslV 1584303..1584848 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  J9319_RS08200 (J9319_08200) hslU 1584865..1586265 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  J9319_RS08205 (J9319_08205) codY 1586300..1587079 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J9319_RS08210 (J9319_08210) flgB 1587368..1587757 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  J9319_RS08215 (J9319_08215) flgC 1587757..1588209 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  J9319_RS08220 (J9319_08220) fliE 1588221..1588538 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  J9319_RS08225 (J9319_08225) fliF 1588589..1590181 (+) 1593 WP_210552433.1 flagellar basal-body MS-ring/collar protein FliF -
  J9319_RS08230 (J9319_08230) fliG 1590193..1591209 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  J9319_RS08235 (J9319_08235) fliH 1591202..1591966 (+) 765 WP_017359090.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=556372 J9319_RS08205 WP_007499612.1 1586300..1587079(+) (codY) [Bacillus altitudinis strain 6ww6]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=556372 J9319_RS08205 WP_007499612.1 1586300..1587079(+) (codY) [Bacillus altitudinis strain 6ww6]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGGGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGTGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471