Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | G148_RS03985 | Genome accession | NC_020125 |
| Coordinates | 831111..831764 (+) | Length | 217 a.a. |
| NCBI ID | WP_004918078.1 | Uniprot ID | A0AAP6LJM8 |
| Organism | Riemerella anatipestifer RA-CH-2 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 826111..836764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G148_RS03955 (G148_0793) | - | 826476..826853 (+) | 378 | WP_004918086.1 | group III truncated hemoglobin | - |
| G148_RS03960 (G148_0794) | dprA | 826856..827959 (+) | 1104 | WP_004918085.1 | DNA-processing protein DprA | Machinery gene |
| G148_RS03965 (G148_0795) | gdhA | 828143..829501 (+) | 1359 | WP_014938006.1 | NADP-specific glutamate dehydrogenase | - |
| G148_RS03970 (G148_0796) | - | 829633..830283 (+) | 651 | WP_004918082.1 | HD domain-containing protein | - |
| G148_RS03975 (G148_0797) | - | 830338..830889 (+) | 552 | WP_004918080.1 | hypothetical protein | - |
| G148_RS03985 (G148_0798) | comF | 831111..831764 (+) | 654 | WP_004918078.1 | ComF family protein | Machinery gene |
| G148_RS03990 (G148_0800) | - | 832074..833048 (+) | 975 | WP_004918076.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| G148_RS03995 (G148_0801) | - | 833096..834751 (+) | 1656 | WP_004918074.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| G148_RS04000 (G148_0802) | - | 834862..835944 (+) | 1083 | WP_004918073.1 | serine hydrolase domain-containing protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25339.46 Da Isoelectric Point: 9.4150
>NTDB_id=55635 G148_RS03985 WP_004918078.1 831111..831764(+) (comF) [Riemerella anatipestifer RA-CH-2]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
Nucleotide
Download Length: 654 bp
>NTDB_id=55635 G148_RS03985 WP_004918078.1 831111..831764(+) (comF) [Riemerella anatipestifer RA-CH-2]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
100 |
100 |
1 |