Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J9B93_RS07995 Genome accession   NZ_CP072843
Coordinates   1593759..1594538 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain VY03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588759..1599538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9B93_RS07975 (J9B93_07975) trmFO 1589446..1590753 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J9B93_RS07980 (J9B93_07980) xerC 1590823..1591740 (+) 918 WP_210602116.1 tyrosine recombinase XerC -
  J9B93_RS07985 (J9B93_07985) hslV 1591756..1592301 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  J9B93_RS07990 (J9B93_07990) hslU 1592318..1593721 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  J9B93_RS07995 (J9B93_07995) codY 1593759..1594538 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J9B93_RS08000 (J9B93_08000) flgB 1594892..1595281 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  J9B93_RS08005 (J9B93_08005) flgC 1595281..1595733 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  J9B93_RS08010 (J9B93_08010) fliE 1595744..1596064 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  J9B93_RS08015 (J9B93_08015) fliF 1596107..1597717 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  J9B93_RS08020 (J9B93_08020) fliG 1597730..1598746 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  J9B93_RS08025 (J9B93_08025) fliH 1598739..1599494 (+) 756 WP_003154255.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=556099 J9B93_RS07995 WP_003154263.1 1593759..1594538(+) (codY) [Bacillus velezensis strain VY03]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=556099 J9B93_RS07995 WP_003154263.1 1593759..1594538(+) (codY) [Bacillus velezensis strain VY03]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471