Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   J9174_RS07590 Genome accession   NZ_CP072837
Coordinates   1456128..1458521 (-) Length   797 a.a.
NCBI ID   WP_210151862.1    Uniprot ID   -
Organism   Macrococcoides canis strain 19/EPI0118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1451128..1463521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9174_RS07570 (J9174_07570) - 1452189..1452500 (-) 312 WP_099482913.1 DUF1292 domain-containing protein -
  J9174_RS07575 (J9174_07575) ruvX 1452516..1452935 (-) 420 WP_086042803.1 Holliday junction resolvase RuvX -
  J9174_RS07580 (J9174_07580) - 1452928..1453173 (-) 246 WP_226997688.1 IreB family regulatory phosphoprotein -
  J9174_RS07585 (J9174_07585) alaS 1453253..1455877 (-) 2625 WP_210151861.1 alanine--tRNA ligase -
  J9174_RS07590 (J9174_07590) recD2 1456128..1458521 (-) 2394 WP_210151862.1 ATP-dependent RecD-like DNA helicase Machinery gene
  J9174_RS07595 (J9174_07595) - 1458524..1459183 (-) 660 WP_210151863.1 tetratricopeptide repeat protein -
  J9174_RS07600 (J9174_07600) mnmA 1459283..1460398 (-) 1116 WP_210151864.1 tRNA 2-thiouridine(34) synthase MnmA -
  J9174_RS07605 (J9174_07605) - 1460410..1461537 (-) 1128 WP_210151865.1 cysteine desulfurase family protein -
  J9174_RS07610 (J9174_07610) - 1461710..1462705 (+) 996 WP_164942353.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90167.41 Da        Isoelectric Point: 4.5275

>NTDB_id=556037 J9174_RS07590 WP_210151862.1 1456128..1458521(-) (recD2) [Macrococcoides canis strain 19/EPI0118]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDRVPKLSDEKKELIFNTIHDNQAIEKIM
IRLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVDPDRLVIALTELTEEHKLVEHEKNIYIPSLFYSETKAVQILHRLMNHMDQVKQFEQ
SEVLLAIGELESLFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSSQIPEVIEKIVRSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DVQAFNEGIKRIGNARFTSFYQFLIDYFKTDEADDTKHDNAGGNVLPFDVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=556037 J9174_RS07590 WP_210151862.1 1456128..1458521(-) (recD2) [Macrococcoides canis strain 19/EPI0118]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGGACAATAACGAGAATATTATTTTATAACAATGATAATTT
CTATACTGTGCTGAAGGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGATACCTTCCGC
AAATTGCAGAAGGTGATACATATACGTTCACAGGTAAGATTGTAACGCATCCGAAGTACGGAAAGCAGTTACAGGCAGAT
AAGTTTGAGAAGGATATGCCGCAGTCTCGTGACGGTATTATTCATTATTTATCGAGTGATCTGTTTAAAGGGGTAGGTAA
GAAAACAGCGAGAACAATTGTTGAAGTACTGGGTGAAGATGCGCTAAATATTATTCTCGATGATAAAAGTAGTCTTGACA
GAGTCCCGAAGTTATCAGACGAGAAAAAAGAGCTAATTTTTAATACGATACACGACAATCAGGCAATCGAGAAGATTATG
ATTCGTCTGAATGAATTTGGATTCGGTCCACAGCTTGCAATGAAGATCTATCAGTTCTATAAGGATGATACGCTGAAGGT
GATTAATGAATCCCCATATCAACTCGTGATGGATATTGAAGGTATCGGATTTAATAAGGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCCGAACGTCTGAAAGCAGCGCTCGTGTTTACGATAGAGCAAGCCTCTAATCAGAATGGT
CATACATATATTCCGGACCAGGTGTTACTTGAAACGAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCGATCCAGA
CCGTCTCGTTATCGCACTCACTGAACTGACAGAGGAACATAAGCTCGTTGAACATGAGAAGAACATCTATATCCCGAGTC
TATTCTACTCTGAAACGAAAGCTGTACAAATATTGCATCGATTAATGAATCATATGGACCAGGTGAAACAGTTCGAACAG
TCTGAAGTATTGCTGGCAATCGGGGAACTGGAGTCACTGTTCGAAGTGAGTTATGCAGAACGACAGAAAGATGCGCTTGT
AACGGCGATGAACAGTAAACTGATGATCTTAACGGGGGGACCAGGTACAGGAAAGACGACGGTTGTGCGCGGTATTGTGA
ATTTATATGCTGAACTGCATGGGTTAAGTCTAGATTATGATGACTATGATGGGCAGGACTATCCGATCGTTGTCGCAGCA
CCAACTGGTCGTGCATCGAAACGTCTTCAGGAGTCTACAGGACTTGAAGCGACGACAATACACAGGTTAATTGGCTGGAC
GAGAGAGAATAAACCCGATGATGTACTGGAAACGGAAATTACAGCGAAGCTTGTCATTATCGATGAAATGTCGATGGTTG
ATACGTGGCTCATGTTTCAGTTGATGAAAGCTGTGCCGAATGATGCACAGATTATCTTTGTCGGTGACCAGGACCAGCTG
CCATCCGTTGGACCAGGGCAAGTGTTCAAAGACATGATAGATGCACAAATTATGCCGCAGATTGAGCTGAATGAAGTGTA
CAGGCAGCAGGAAGGTTCATCAATCGTTGAACTTGCGCATCAAATTAAGCGTAATGAACCATTTGATATTACGAAACGTT
ATAATGACAGAAGCTTTATACCGTGCTCAAGCAGTCAAATACCAGAAGTGATCGAGAAGATCGTGCGCAGTGCTGTGAAT
AAAGGGTATGACATGCGTGATATACAAGTACTCGCACCGATATATAGAGGACCAGCGGGTATACGTGCGCTGAACAAAGT
GCTGCAGGAAATATTGAATCCAAGTGATGAAAACAAGCGTGAACTACAGTTTGGTGATGTTTATTTCAGGACAGGGGACA
AAGTGCTGCAGCTTGTCAATCGACCGGAAGACAATGTGTTTAACGGTGATATTGGTGAAGTGACGGGTATCTTTATGGCG
GCAGAGAACGCGCTGAATAAAGATGTTGTCATTGTGGATTATGATGGGAGTGAAGTAACGTATACGAAAGCGGATTTAAT
GGAAGTTACACATGCCTACTGCTGCTCCATTCATAAATCACAAGGTTCGGAATTTCCGATTGTCATTATGCCGGTTGTCA
ATCAATACTTCAGAATGCTGCAGAAGAATATACTCTATACCGGATTAACACGCGCGAAACAGTCACTTATTTTCTGTGGA
GATGTACAGGCGTTTAATGAAGGAATAAAGCGAATCGGTAACGCAAGGTTTACAAGCTTCTATCAGTTTCTTATCGATTA
TTTTAAGACAGATGAAGCAGATGATACAAAGCATGATAATGCAGGTGGTAACGTATTACCTTTCGACGTTGGTGAGATGA
CTGAAGACAATATGCATCTCGTTGATCCGATGATTAACATGGAAGGTATAACACCCTATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

AAA domain (AAA_30)

(338-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.677

100

0.522