Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SMUNUM_RS09870 Genome accession   NZ_AP014571
Coordinates   1990292..1991560 (+) Length   422 a.a.
NCBI ID   WP_168747877.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985292..1996560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS09825 (SMNUM_1864) - 1985522..1985797 (-) 276 WP_226722731.1 hypothetical protein -
  SMUNUM_RS09830 (SMNUM_1865) - 1985835..1986095 (-) 261 WP_002290226.1 hypothetical protein -
  SMUNUM_RS09835 (SMNUM_1866) - 1986378..1986572 (+) 195 WP_002269406.1 hypothetical protein -
  SMUNUM_RS09840 - 1986600..1986896 (-) 297 WP_002278482.1 LacI family DNA-binding transcriptional regulator -
  SMUNUM_RS09845 (SMNUM_1867) - 1986958..1987701 (-) 744 WP_002262360.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SMUNUM_RS09850 (SMNUM_1868) prmA 1987702..1988655 (-) 954 WP_168747879.1 50S ribosomal protein L11 methyltransferase -
  SMUNUM_RS09855 (SMNUM_1869) - 1988884..1989180 (-) 297 WP_002268478.1 LlsX family protein -
  SMUNUM_RS09860 (SMNUM_1870) - 1989193..1989663 (-) 471 WP_002262363.1 DUF3013 family protein -
  SMUNUM_RS09865 (SMNUM_1871) - 1989811..1990302 (+) 492 WP_002273482.1 GNAT family N-acetyltransferase -
  SMUNUM_RS09870 (SMNUM_1872) rarA 1990292..1991560 (+) 1269 WP_168747877.1 replication-associated recombination protein A Machinery gene
  SMUNUM_RS09885 (SMNUM_1873) - 1991965..1993881 (-) 1917 WP_002268300.1 heavy metal translocating P-type ATPase -
  SMUNUM_RS09890 (SMNUM_1874) - 1993980..1994774 (+) 795 WP_002262367.1 helix-turn-helix domain-containing protein -
  SMUNUM_RS09895 (SMNUM_1875) - 1994943..1995968 (-) 1026 WP_002269770.1 YeiH family protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46443.79 Da        Isoelectric Point: 6.5109

>NTDB_id=55600 SMUNUM_RS09870 WP_168747877.1 1990292..1991560(+) (rarA) [Streptococcus mutans LP13]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
AALTDTERGFDFEVKLDDDALDFIATATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYAGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKSKIDQLSQ

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=55600 SMUNUM_RS09870 WP_168747877.1 1990292..1991560(+) (rarA) [Streptococcus mutans LP13]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGCCCTCCGGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTG
CAGGAAATTGCTGAAGAAGCTAAATTTTCAGGTGGTTTGGTCTTGCTCCTAGATGAAATTCATCGTCTGGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAGTTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GCAGCTCTGACAGATACAGAGCGCGGCTTTGATTTTGAAGTCAAACTAGATGATGATGCTCTTGACTTCATTGCGACAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCTACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGGCCACTAT
GATGTCTTGTCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATCGGCTTAGCCAATCCTGATGCAC
AGATTCATACAGTGACAGCGCTGGAAGCAGCCCAAAAAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTTGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAGAGTGG
CACGATCCCTATTCCTCGCCACTTGCGTGATGGTCATTACGCTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCATTAGGAGCTAATAAGAGTAAGATTGACCAGCTCTCCCAATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-413)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.705

96.445

0.576

Multiple sequence alignment