Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   L0998_RS05410 Genome accession   NZ_CP090876
Coordinates   1066482..1067255 (-) Length   257 a.a.
NCBI ID   WP_054190201.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1061482..1072255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS05375 (L0998_05375) - 1061735..1062505 (-) 771 WP_000473705.1 isoprenyl transferase -
  L0998_RS05380 (L0998_05380) frr 1062878..1063432 (-) 555 WP_054190200.1 ribosome recycling factor -
  L0998_RS05385 (L0998_05385) pyrH 1063451..1064173 (-) 723 WP_000057330.1 UMP kinase -
  L0998_RS05390 (L0998_05390) tsf 1064310..1065191 (-) 882 WP_000201387.1 translation elongation factor Ts -
  L0998_RS05395 (L0998_05395) - 1065226..1065339 (-) 114 WP_001789890.1 hypothetical protein -
  L0998_RS05400 (L0998_05400) rpsB 1065373..1066140 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  L0998_RS05405 (L0998_05405) - 1066339..1066431 (-) 93 WP_031788481.1 hypothetical protein -
  L0998_RS05410 (L0998_05410) codY 1066482..1067255 (-) 774 WP_054190201.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  L0998_RS05415 (L0998_05415) hslU 1067280..1068683 (-) 1404 WP_054190202.1 ATP-dependent protease ATPase subunit HslU -
  L0998_RS05420 (L0998_05420) hslV 1068749..1069294 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  L0998_RS05425 (L0998_05425) xerC 1069291..1070187 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  L0998_RS05430 (L0998_05430) trmFO 1070604..1071911 (-) 1308 WP_054190203.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28771.19 Da        Isoelectric Point: 6.0680

>NTDB_id=555987 L0998_RS05410 WP_054190201.1 1066482..1067255(-) (codY) [Staphylococcus aureus strain SAUR_BFS12]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPTEYTERLM
EVKQTESNIDIDNALTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGMEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=555987 L0998_RS05410 WP_054190201.1 1066482..1067255(-) (codY) [Staphylococcus aureus strain SAUR_BFS12]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAACTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGCATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTATGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428