Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   L0998_RS03485 Genome accession   NZ_CP090876
Coordinates   648580..649854 (-) Length   424 a.a.
NCBI ID   WP_054190068.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 643580..654854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS03460 (L0998_03460) hisS 644141..645403 (+) 1263 WP_054190070.1 histidine--tRNA ligase -
  L0998_RS03465 (L0998_03465) aspS 645419..647185 (+) 1767 WP_054190069.1 aspartate--tRNA ligase -
  L0998_RS03475 (L0998_03475) - 647518..647646 (+) 129 WP_001791215.1 hypothetical protein -
  L0998_RS03480 (L0998_03480) - 647646..648419 (+) 774 WP_000682646.1 ThiF family adenylyltransferase -
  L0998_RS03485 (L0998_03485) rarA 648580..649854 (-) 1275 WP_054190068.1 replication-associated recombination protein A Machinery gene
  L0998_RS03490 (L0998_03490) cymR 649939..650361 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  L0998_RS03495 (L0998_03495) - 650461..650643 (+) 183 WP_000752909.1 CsbD family protein -
  L0998_RS03500 (L0998_03500) - 650683..650829 (+) 147 WP_000009238.1 SAS049 family protein -
  L0998_RS03505 (L0998_03505) - 651066..652079 (-) 1014 WP_000985882.1 LLM class flavin-dependent oxidoreductase -
  L0998_RS03510 (L0998_03510) - 652390..653532 (+) 1143 WP_054190067.1 cysteine desulfurase family protein -
  L0998_RS03515 (L0998_03515) mnmA 653533..654651 (+) 1119 WP_054190066.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47268.83 Da        Isoelectric Point: 8.3539

>NTDB_id=555963 L0998_RS03485 WP_054190068.1 648580..649854(-) (rarA) [Staphylococcus aureus strain SAUR_BFS12]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQTKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=555963 L0998_RS03485 WP_054190068.1 648580..649854(-) (rarA) [Staphylococcus aureus strain SAUR_BFS12]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATATTGTTATTAGATGAAATACATCGACTAGATAAAGC
CAAACAAGACTTTTTATTACCTCATTTAGAAAACGGTAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAAACCAAAATTGATGAAGATGCCATGACATACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAGTTAGCTGTATTAAGTGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGACCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(174-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686