Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SMUNUM_RS08815 Genome accession   NZ_AP014571
Coordinates   1785387..1787750 (+) Length   787 a.a.
NCBI ID   WP_168747856.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1780387..1792750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS08795 (SMNUM_1666) - 1782740..1783285 (-) 546 WP_002263361.1 CvpA family protein -
  SMUNUM_RS08800 (SMNUM_1667) - 1783282..1783587 (-) 306 WP_002263360.1 hypothetical protein -
  SMUNUM_RS08805 (SMNUM_1668) rnhC 1783783..1784694 (+) 912 WP_002284756.1 ribonuclease HIII -
  SMUNUM_RS08810 (SMNUM_1669) lepB 1784714..1785301 (+) 588 WP_002263358.1 signal peptidase I -
  SMUNUM_RS08815 (SMNUM_1670) recD/recD2/recDB 1785387..1787750 (+) 2364 WP_168747856.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SMUNUM_RS08820 (SMNUM_1671) - 1787849..1788319 (+) 471 WP_002263356.1 hypothetical protein -
  SMUNUM_RS08825 (SMNUM_1672) - 1789196..1790188 (+) 993 WP_002263355.1 PTS sugar transporter subunit IIB -
  SMUNUM_RS08830 (SMNUM_1673) - 1790223..1791041 (+) 819 WP_002263354.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  SMUNUM_RS08835 (SMNUM_1674) - 1791056..1791982 (+) 927 WP_002263353.1 PTS system mannose/fructose/sorbose family transporter subunit IID -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88841.25 Da        Isoelectric Point: 5.4844

>NTDB_id=55577 SMUNUM_RS08815 WP_168747856.1 1785387..1787750(+) (recD/recD2/recDB) [Streptococcus mutans LP13]
MTYYFSGTIDRVIFENTSNFFKIILLEIDDTDSDFDDFEIIVTGTIADVIEGENYTFWGELTQHPKYGQQLKVERYQRAK
PSSAGLIKYFSSQHFKGIGKKTAEKIIHLYGDDPIDNILEDPDKLESISGLSKANRENLVSKLRLNYGAEQILAKLAEYG
LNNKTAVQIFERYKEESLTIITENPYQLVEDIQGIGFKMADKLAEQVGINSDAPQRFRAALVHTLLETSIDKGDTYIEAK
ELLEKSLFILEEVRQVELDPSQIAQELTQLISEDKVQNIGTKIFDNTLFYAESGIHKHLTRILDRPLEKEISSQDIQTEI
KHIQAEFNINYDKAQKNAIQKAIQSKVFLLTGGPGTGKTTVINGIIKAYANLHQIDLQKSDPPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDSEYQALDDFLDCDLIIIDEFSMVDTWLANQLFSAIASNTQVIIVGDSDQLPSVGPGQILADLL
KINRLPQVSLTKIFRQSEDSTIVTLANQIRQGRLPTDFTAKKADRSYFEAQSTHIPQMIQKIVSSALKSGIDAQEIQILA
PMYRGQAGITHLNKLMQDLLNPLNNQLEFQFNDLHFRKGDKVLHLINDAQINVFNGDIGYITDLIPAKYTESKQDEMILD
FDGTEINYPRNEWLKITLAYAMSIHKSQGSEFKVVILPVTRQSGRLLQRNLIYTAITRSKSKLVMLGEIAAFDNAIKNEG
TKRKTYLIERFKKDECSGHHNTEKNKQGVKESAAILKEDFILTERNILTIDPMIGLSQADIDLFFKK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=55577 SMUNUM_RS08815 WP_168747856.1 1785387..1787750(+) (recD/recD2/recDB) [Streptococcus mutans LP13]
ATGACCTATTACTTTTCAGGCACCATTGACCGTGTTATTTTTGAAAATACCAGCAATTTTTTTAAAATTATTCTTCTGGA
AATTGACGATACTGACAGCGATTTTGATGATTTTGAAATTATTGTGACAGGTACTATTGCTGATGTTATTGAAGGAGAAA
ACTATACTTTTTGGGGTGAATTGACCCAGCATCCTAAATATGGACAGCAGTTAAAAGTGGAAAGATACCAGCGTGCTAAA
CCCTCTTCTGCTGGTCTGATTAAGTATTTTTCCAGTCAGCATTTCAAGGGAATCGGGAAAAAAACAGCCGAAAAAATTAT
TCACTTATATGGTGATGACCCTATTGATAATATTCTGGAAGATCCTGATAAGTTAGAAAGTATTAGTGGACTTTCTAAGG
CTAATAGAGAAAATTTAGTTAGTAAACTTCGTCTTAACTACGGTGCTGAACAGATTCTGGCAAAATTAGCAGAATATGGA
TTAAATAACAAAACAGCTGTTCAAATTTTTGAACGCTATAAAGAAGAAAGTTTGACTATTATTACTGAAAATCCTTATCA
ACTGGTTGAGGACATTCAAGGCATTGGATTCAAAATGGCTGACAAATTAGCAGAACAAGTAGGTATTAACAGCGATGCTC
CTCAGCGTTTTCGTGCTGCTCTTGTTCATACTCTTTTAGAAACCTCTATTGACAAAGGTGACACCTATATTGAAGCCAAA
GAATTACTCGAAAAATCTCTTTTTATTCTTGAAGAGGTGAGACAAGTCGAACTGGATCCCAGTCAAATTGCTCAGGAACT
GACACAATTAATCTCCGAAGATAAGGTACAAAATATTGGTACTAAAATCTTTGATAATACGCTTTTTTATGCCGAATCAG
GCATTCATAAGCATCTTACCCGCATTCTGGATAGACCACTTGAAAAAGAGATCAGTAGCCAAGACATTCAAACTGAAATT
AAACATATTCAAGCAGAATTTAATATTAACTATGACAAGGCACAAAAAAATGCTATCCAAAAAGCCATCCAAAGTAAGGT
TTTCCTTTTAACAGGCGGTCCAGGAACCGGAAAAACGACTGTCATCAATGGAATTATTAAGGCTTATGCTAATTTGCATC
AAATTGACCTGCAAAAAAGTGACCCACCTATTATTCTGGCTGCCCCGACTGGTCGTGCTGCTAGACGGATGAATGAGCTA
ACAGGTTTACCTAGTGCCACCATTCACCGGCATTTAGGACTTAATGGTGATAGTGAATATCAGGCACTTGATGATTTTCT
GGATTGTGATCTCATTATTATTGACGAGTTTTCTATGGTTGATACTTGGCTAGCCAATCAATTGTTTAGTGCTATTGCTT
CAAATACACAAGTTATCATTGTTGGTGATAGCGATCAGCTCCCATCCGTCGGTCCAGGTCAAATTTTGGCTGATTTACTG
AAAATAAATAGATTACCGCAAGTTTCCTTAACTAAAATATTCAGGCAATCTGAGGACTCAACTATTGTCACACTTGCCAA
CCAGATTCGCCAAGGTCGTCTTCCAACTGACTTCACAGCTAAAAAGGCTGACCGTTCTTATTTTGAAGCACAGAGCACTC
ACATTCCGCAAATGATTCAAAAGATTGTCAGTTCTGCCCTTAAAAGTGGTATAGATGCTCAGGAAATACAGATTTTAGCA
CCGATGTATCGTGGGCAAGCAGGTATTACGCATCTTAATAAACTGATGCAAGATTTGCTCAATCCTTTAAATAACCAGTT
AGAATTTCAATTTAATGACCTTCATTTTCGTAAGGGCGATAAAGTACTTCATCTTATCAACGATGCGCAAATTAACGTGT
TTAATGGTGACATTGGGTACATTACTGATCTTATTCCTGCAAAATATACAGAGTCCAAACAAGATGAAATGATTCTGGAT
TTTGATGGAACTGAGATTAACTATCCTCGCAATGAATGGTTGAAAATAACACTCGCTTACGCTATGAGTATCCACAAATC
TCAAGGCAGTGAATTTAAAGTAGTTATTCTTCCTGTCACACGCCAAAGCGGCAGACTTTTGCAACGCAATCTCATTTATA
CAGCTATCACACGCTCAAAAAGCAAACTTGTCATGTTGGGAGAAATTGCAGCCTTTGACAACGCCATCAAAAATGAAGGA
ACTAAAAGAAAAACTTATCTTATTGAACGCTTTAAGAAGGATGAATGCAGTGGCCACCATAACACCGAGAAAAATAAACA
AGGAGTAAAAGAAAGTGCAGCTATATTAAAAGAAGATTTTATTTTGACAGAAAGAAATATCTTAACGATTGACCCTATGA
TTGGCTTATCTCAAGCTGACATTGACTTATTTTTTAAGAAATAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-524)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.972

94.917

0.408

Multiple sequence alignment