Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   LT978_RS11680 Genome accession   NZ_CP090838
Coordinates   2407876..2408325 (-) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain TL106     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2402876..2413325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS11645 (LT978_11640) sepM 2402972..2403994 (-) 1023 WP_003154464.1 SepM family pheromone-processing serine protease Regulator
  LT978_RS11650 (LT978_11645) - 2404000..2404779 (-) 780 WP_014304961.1 patatin family protein -
  LT978_RS11655 (LT978_11650) ylbJ 2404959..2406185 (+) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  LT978_RS11660 (LT978_11655) coaD 2406204..2406686 (-) 483 WP_003154467.1 pantetheine-phosphate adenylyltransferase -
  LT978_RS11665 (LT978_11660) rsmD 2406691..2407245 (-) 555 WP_003154468.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LT978_RS11670 (LT978_11665) - 2407245..2407454 (-) 210 WP_015388275.1 hypothetical protein -
  LT978_RS11675 (LT978_11670) - 2407545..2407817 (-) 273 WP_003154470.1 YlbG family protein -
  LT978_RS11680 (LT978_11675) ylbF 2407876..2408325 (-) 450 WP_003154472.1 YlbF family regulator Regulator
  LT978_RS11685 (LT978_11680) - 2408396..2408635 (-) 240 WP_003154475.1 YlbE-like family protein -
  LT978_RS11690 (LT978_11685) - 2408651..2409061 (-) 411 WP_014304959.1 YlbD family protein -
  LT978_RS11695 (LT978_11690) - 2409226..2410266 (-) 1041 WP_063174804.1 CAP domain-containing protein -
  LT978_RS11700 (LT978_11695) - 2410351..2410794 (-) 444 WP_003154478.1 CBS domain-containing protein -
  LT978_RS11705 (LT978_11700) - 2410935..2411294 (+) 360 WP_003154479.1 YugN family protein -
  LT978_RS11710 (LT978_11705) ctaG 2411328..2412212 (-) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  LT978_RS11715 (LT978_11710) ctaF 2412237..2412569 (-) 333 WP_015388278.1 cytochrome c oxidase subunit IVB -
  LT978_RS11720 (LT978_11715) ctaE 2412572..2413195 (-) 624 WP_003154482.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=555696 LT978_RS11680 WP_003154472.1 2407876..2408325(-) (ylbF) [Bacillus amyloliquefaciens strain TL106]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=555696 LT978_RS11680 WP_003154472.1 2407876..2408325(-) (ylbF) [Bacillus amyloliquefaciens strain TL106]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGATGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879