Detailed information NTG0555653

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: LT978_RS06675
• Genome accession: NZ_CP090838
• Coordinates: 1303088..1304356 (-)
• Length: 422 a.a.
• NCBI ID: WP_003152729.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain TL106
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1298088..1309356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT978_RS06650 (LT978_06645)	-	1298327..1298497 (+)	171	WP_003152722.1	YrzK family protein	-
LT978_RS06655 (LT978_06650)	hisS	1298854..1300128 (+)	1275	WP_139890031.1	histidine--tRNA ligase	-
LT978_RS06660 (LT978_06655)	aspS	1300143..1301921 (+)	1779	WP_003152727.1	aspartate--tRNA ligase	-
LT978_RS06670 (LT978_06665)	-	1302248..1303012 (+)	765	WP_003152728.1	tRNA threonylcarbamoyladenosine dehydratase	-
LT978_RS06675 (LT978_06670)	rarA	1303088..1304356 (-)	1269	WP_003152729.1	replication-associated recombination protein A	Machinery gene
LT978_RS06680 (LT978_06675)	cymR	1304551..1304967 (+)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
LT978_RS06685 (LT978_06680)	-	1304986..1306125 (+)	1140	WP_003152731.1	cysteine desulfurase family protein	-
LT978_RS06690 (LT978_06685)	mnmA	1306162..1307277 (+)	1116	WP_003152732.1	tRNA 2-thiouridine(34) synthase MnmA	-
LT978_RS06695 (LT978_06690)	-	1307335..1307985 (+)	651	WP_003152733.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46660.57 Da
• Isoelectric Point: 8.5446

>NTDB_id=555653 LT978_RS06675 WP_003152729.1 1303088..1304356(-) (rarA) [Bacillus amyloliquefaciens strain TL106]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=555653 LT978_RS06675 WP_003152729.1 1303088..1304356(-) (rarA) [Bacillus amyloliquefaciens strain TL106]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGTCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCGAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGATGAAGTGCACAGACTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCGTTCCAAAAATCGATCCGGGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCGAAATCAAACTCCGCCATTTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCCCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.974	99.763	0.908