Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LZ559_RS04830 Genome accession   NZ_CP090837
Coordinates   1075664..1077031 (-) Length   455 a.a.
NCBI ID   WP_030800072.1    Uniprot ID   -
Organism   Streptomyces sp. R527F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1070664..1082031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ559_RS04805 (LZ559_04805) - 1070888..1071223 (-) 336 WP_030800080.1 DUF6167 family protein -
  LZ559_RS04810 (LZ559_04810) - 1071231..1071686 (-) 456 WP_030800079.1 DUF948 domain-containing protein -
  LZ559_RS04815 (LZ559_04815) - 1071906..1074119 (+) 2214 WP_234876352.1 AAA family ATPase -
  LZ559_RS04820 (LZ559_04820) rpsD 1074137..1074751 (-) 615 WP_007457953.1 30S ribosomal protein S4 -
  LZ559_RS04825 (LZ559_04825) - 1074943..1075644 (+) 702 WP_030800075.1 DUF2470 domain-containing protein -
  LZ559_RS04830 (LZ559_04830) rarA 1075664..1077031 (-) 1368 WP_030800072.1 replication-associated recombination protein A Machinery gene
  LZ559_RS04835 (LZ559_04835) - 1077120..1077758 (-) 639 WP_030800070.1 vitamin K epoxide reductase family protein -
  LZ559_RS04840 (LZ559_04840) hisS 1078100..1079362 (-) 1263 WP_030800068.1 histidine--tRNA ligase -
  LZ559_RS04845 (LZ559_04845) - 1079380..1080069 (-) 690 WP_032780910.1 MBL fold metallo-hydrolase -
  LZ559_RS04850 (LZ559_04850) - 1080227..1081018 (+) 792 WP_234876353.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48356.66 Da        Isoelectric Point: 6.0293

>NTDB_id=555539 LZ559_RS04830 WP_030800072.1 1075664..1077031(-) (rarA) [Streptomyces sp. R527F]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGDGGGPAGASSVILWGPPGTGKTTLAYV
VSKATDKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLEPLTDDDLRSLLRRALTEERGLGGAVTLPGDAEAHLLRIAGGDARRALTALEAAAGAAIATQEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQDDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRQYYTPTRYGAEARYADVVERVRERLGRAGESGEQA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=555539 LZ559_RS04830 WP_030800072.1 1075664..1077031(-) (rarA) [Streptomyces sp. R527F]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCTCTCGCTGTCCGGAT
GCGCCCCCGCACCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCCCTGCGTCGCCTCGTGGGCG
ACGGGGGCGGCCCGGCGGGGGCGTCCTCCGTCATCCTGTGGGGCCCGCCCGGCACCGGTAAGACGACCCTGGCGTATGTG
GTCAGCAAGGCCACCGACAAGCGATTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCCGTCATCGA
GAGCGCGCGCCGCGCCACCGGTGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTGCCCGCCGTGGAGAACCGCTGGGTGACGCTCATCGCAGCCACCACGGAGAATCCGTATTTCTCG
ATCATCTCCCCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGACCTGCGCTCCCTGCTGCG
CCGGGCGCTGACCGAGGAGCGGGGGCTCGGCGGGGCGGTCACCCTGCCCGGGGACGCCGAGGCGCATCTGCTGCGGATCG
CCGGCGGCGACGCGCGCCGGGCGCTCACCGCGCTGGAGGCCGCGGCCGGTGCCGCCATCGCCACGCAGGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCGACCGTCGACCGGGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAATCCATTCGCGGGTCCGACGTGGACGCCGCCCTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGACCCCACCGCGCTGCCG
ACGGCGGTCGCGGCCGCCCAGGCCGTCGCCATGATCGGTTTCCCTGAGGCGGCGCTCACCCTCAGCCACGCCACCATCGC
GCTGGCGCTCGCGCCCAAGTCCAACGCGGCGACGCTGGCGATCTCCGCCGCGCAGGACGACGTGCGCAGAGGGCTCGCCG
GACCCGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTATGTCTATCCG
CACGACGTGCAGGGCGGCATCGCCGCCCAGCAGTACGCCCCGGACGCCGTCCGGGACCGGCAGTACTACACACCCACCCG
CTACGGCGCCGAGGCGCGGTACGCGGACGTCGTCGAGCGCGTCCGCGAGCGCCTCGGCCGCGCCGGCGAGAGCGGTGAGC
AGGCGTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

AAA C-terminal domain (AAA_assoc_2)

(199-275)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.316

94.725

0.42